Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC28A1O00337 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.67■□□□□ 0.9
SLC28A1O00337 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
SLC28A1O00337 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.67■□□□□ 0.9
SLC28A1O00337 SYT6-210ENST00000641643 1587 ntBASIC20.67■□□□□ 0.9
SLC28A1O00337 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SLC28A1O00337 Z98882.1-201ENST00000622160 2253 ntBASIC20.66■□□□□ 0.9
SLC28A1O00337 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC28A1O00337 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC28A1O00337 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.66■□□□□ 0.9
SLC28A1O00337 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.66■□□□□ 0.9
SLC28A1O00337 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.66■□□□□ 0.9
SLC28A1O00337 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.66■□□□□ 0.9
SLC28A1O00337 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
SLC28A1O00337 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
SLC28A1O00337 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC28A1O00337 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SLC28A1O00337 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC28A1O00337 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
SLC28A1O00337 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.65■□□□□ 0.9
SLC28A1O00337 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.65■□□□□ 0.9
SLC28A1O00337 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC28A1O00337 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SLC28A1O00337 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SLC28A1O00337 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SLC28A1O00337 SERBP1P1-201ENST00000396021 1160 ntBASIC20.65■□□□□ 0.9
SLC28A1O00337 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.65■□□□□ 0.9
SLC28A1O00337 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SLC28A1O00337 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SLC28A1O00337 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SLC28A1O00337 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SLC28A1O00337 AC026471.6-201ENST00000622954 1905 ntBASIC20.65■□□□□ 0.9
SLC28A1O00337 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
SLC28A1O00337 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.9
SLC28A1O00337 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.64■□□□□ 0.89
SLC28A1O00337 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SLC28A1O00337 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC28A1O00337 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SLC28A1O00337 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SLC28A1O00337 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.64■□□□□ 0.89
SLC28A1O00337 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC28A1O00337 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SLC28A1O00337 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SLC28A1O00337 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.64■□□□□ 0.89
SLC28A1O00337 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC28A1O00337 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC28A1O00337 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC28A1O00337 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC28A1O00337 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SLC28A1O00337 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.64■□□□□ 0.89
SLC28A1O00337 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SLC28A1O00337 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC28A1O00337 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC28A1O00337 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.63■□□□□ 0.89
SLC28A1O00337 AL034346.1-201ENST00000568244 1277 ntBASIC20.63■□□□□ 0.89
SLC28A1O00337 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SLC28A1O00337 MIR4466-201ENST00000606121 54 ntBASIC20.63■□□□□ 0.89
SLC28A1O00337 AC136469.2-201ENST00000623944 1028 ntBASIC20.63■□□□□ 0.89
SLC28A1O00337 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.63■□□□□ 0.89
SLC28A1O00337 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC28A1O00337 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SLC28A1O00337 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.63■□□□□ 0.89
SLC28A1O00337 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.63■□□□□ 0.89
SLC28A1O00337 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SLC28A1O00337 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SLC28A1O00337 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC28A1O00337 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SLC28A1O00337 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SLC28A1O00337 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.62■□□□□ 0.89
SLC28A1O00337 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.62■□□□□ 0.89
SLC28A1O00337 AC011298.3-201ENST00000615796 283 ntBASIC20.62■□□□□ 0.89
SLC28A1O00337 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC28A1O00337 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC28A1O00337 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC28A1O00337 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC28A1O00337 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SLC28A1O00337 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC28A1O00337 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SLC28A1O00337 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SLC28A1O00337 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.61■□□□□ 0.89
SLC28A1O00337 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.61■□□□□ 0.89
SLC28A1O00337 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SLC28A1O00337 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SLC28A1O00337 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SLC28A1O00337 AP005435.1-201ENST00000529293 1178 ntBASIC20.61■□□□□ 0.89
SLC28A1O00337 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.61■□□□□ 0.89
SLC28A1O00337 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.61■□□□□ 0.89
SLC28A1O00337 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SLC28A1O00337 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SLC28A1O00337 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.61■□□□□ 0.89
SLC28A1O00337 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SLC28A1O00337 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SLC28A1O00337 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.61■□□□□ 0.89
SLC28A1O00337 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.61■□□□□ 0.89
SLC28A1O00337 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SLC28A1O00337 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SLC28A1O00337 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC28A1O00337 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC28A1O00337 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SLC28A1O00337 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms