Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PDLIM1O00151 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PDLIM1O00151 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.34■□□□□ 0.85
PDLIM1O00151 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.34■□□□□ 0.85
PDLIM1O00151 UNC93B8-201ENST00000511903 705 ntBASIC20.34■□□□□ 0.85
PDLIM1O00151 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
PDLIM1O00151 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.33■□□□□ 0.85
PDLIM1O00151 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.33■□□□□ 0.85
PDLIM1O00151 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PDLIM1O00151 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.33■□□□□ 0.85
PDLIM1O00151 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDLIM1O00151 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDLIM1O00151 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.33■□□□□ 0.85
PDLIM1O00151 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.33■□□□□ 0.85
PDLIM1O00151 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.33■□□□□ 0.85
PDLIM1O00151 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.33■□□□□ 0.85
PDLIM1O00151 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.85
PDLIM1O00151 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.33■□□□□ 0.85
PDLIM1O00151 SNX5-217ENST00000606557 1087 ntBASIC20.33■□□□□ 0.85
PDLIM1O00151 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PDLIM1O00151 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
PDLIM1O00151 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PDLIM1O00151 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
PDLIM1O00151 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PDLIM1O00151 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PDLIM1O00151 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.33■□□□□ 0.84
PDLIM1O00151 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.84
PDLIM1O00151 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
PDLIM1O00151 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM1O00151 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM1O00151 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM1O00151 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.32■□□□□ 0.84
PDLIM1O00151 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM1O00151 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM1O00151 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM1O00151 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.32■□□□□ 0.84
PDLIM1O00151 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.32■□□□□ 0.84
PDLIM1O00151 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PDLIM1O00151 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.32■□□□□ 0.84
PDLIM1O00151 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
PDLIM1O00151 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
PDLIM1O00151 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.32■□□□□ 0.84
PDLIM1O00151 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.32■□□□□ 0.84
PDLIM1O00151 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.32■□□□□ 0.84
PDLIM1O00151 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.32■□□□□ 0.84
PDLIM1O00151 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.32■□□□□ 0.84
PDLIM1O00151 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PDLIM1O00151 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
PDLIM1O00151 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PDLIM1O00151 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.31■□□□□ 0.84
PDLIM1O00151 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
PDLIM1O00151 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PDLIM1O00151 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PDLIM1O00151 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PDLIM1O00151 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PDLIM1O00151 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
PDLIM1O00151 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PDLIM1O00151 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PDLIM1O00151 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PDLIM1O00151 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.31■□□□□ 0.84
PDLIM1O00151 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.31■□□□□ 0.84
PDLIM1O00151 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PDLIM1O00151 LINC01960-201ENST00000563759 1884 ntBASIC20.3■□□□□ 0.84
PDLIM1O00151 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
PDLIM1O00151 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
PDLIM1O00151 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PDLIM1O00151 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PDLIM1O00151 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PDLIM1O00151 AC004448.1-201ENST00000458332 883 ntBASIC20.3■□□□□ 0.84
PDLIM1O00151 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.3■□□□□ 0.84
PDLIM1O00151 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.3■□□□□ 0.84
PDLIM1O00151 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.3■□□□□ 0.84
PDLIM1O00151 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.3■□□□□ 0.84
PDLIM1O00151 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
PDLIM1O00151 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
PDLIM1O00151 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
PDLIM1O00151 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PDLIM1O00151 Z98882.1-201ENST00000622160 2253 ntBASIC20.3■□□□□ 0.84
PDLIM1O00151 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PDLIM1O00151 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PDLIM1O00151 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PDLIM1O00151 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
PDLIM1O00151 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM1O00151 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.29■□□□□ 0.84
PDLIM1O00151 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM1O00151 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
PDLIM1O00151 AL356441.2-201ENST00000443009 864 ntBASIC20.29■□□□□ 0.84
PDLIM1O00151 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM1O00151 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM1O00151 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM1O00151 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM1O00151 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM1O00151 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
PDLIM1O00151 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
PDLIM1O00151 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PDLIM1O00151 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.28■□□□□ 0.84
PDLIM1O00151 FEM1AP4-201ENST00000443167 1987 ntBASIC20.28■□□□□ 0.84
PDLIM1O00151 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PDLIM1O00151 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
PDLIM1O00151 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms