Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CUEDC1Q9NWM3 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CUEDC1Q9NWM3 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 IRS3P-201ENST00000223076 1006 ntBASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CUEDC1Q9NWM3 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CUEDC1Q9NWM3 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CUEDC1Q9NWM3 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.8■□□□□ 0.92
CUEDC1Q9NWM3 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CUEDC1Q9NWM3 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.8■□□□□ 0.92
CUEDC1Q9NWM3 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.8■□□□□ 0.92
CUEDC1Q9NWM3 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.8■□□□□ 0.92
CUEDC1Q9NWM3 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.8■□□□□ 0.92
CUEDC1Q9NWM3 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.8■□□□□ 0.92
CUEDC1Q9NWM3 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CUEDC1Q9NWM3 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.8■□□□□ 0.92
CUEDC1Q9NWM3 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CUEDC1Q9NWM3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.8■□□□□ 0.92
CUEDC1Q9NWM3 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
CUEDC1Q9NWM3 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 AC012414.1-201ENST00000556676 535 ntBASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 MIR6084-201ENST00000622012 110 ntBASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CUEDC1Q9NWM3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 AC092053.2-201ENST00000640557 1818 ntBASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CUEDC1Q9NWM3 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
CUEDC1Q9NWM3 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CUEDC1Q9NWM3 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CUEDC1Q9NWM3 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CUEDC1Q9NWM3 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CUEDC1Q9NWM3 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CUEDC1Q9NWM3 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.76■□□□□ 0.91
CUEDC1Q9NWM3 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CUEDC1Q9NWM3 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CUEDC1Q9NWM3 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CUEDC1Q9NWM3 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CUEDC1Q9NWM3 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
CUEDC1Q9NWM3 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CUEDC1Q9NWM3 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CUEDC1Q9NWM3 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CUEDC1Q9NWM3 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms