Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CROCCP5-201ENST00000436658 830 ntBASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 AC006970.2-201ENST00000450065 779 ntBASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 AC011767.1-201ENST00000617410 1153 ntBASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TM9SF3Q9HD45 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TM9SF3Q9HD45 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.54■■□□□ 1.04
TM9SF3Q9HD45 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
TM9SF3Q9HD45 KRT18P11-201ENST00000435214 1283 ntBASIC21.54■■□□□ 1.04
TM9SF3Q9HD45 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TM9SF3Q9HD45 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.54■■□□□ 1.04
TM9SF3Q9HD45 AC104771.1-201ENST00000603335 964 ntBASIC21.54■■□□□ 1.04
TM9SF3Q9HD45 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TM9SF3Q9HD45 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
TM9SF3Q9HD45 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 DUSP8P3-201ENST00000399571 1760 ntBASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
TM9SF3Q9HD45 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TM9SF3Q9HD45 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
TM9SF3Q9HD45 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
TM9SF3Q9HD45 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TM9SF3Q9HD45 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TM9SF3Q9HD45 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TM9SF3Q9HD45 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.52■■□□□ 1.04
TM9SF3Q9HD45 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.52■■□□□ 1.04
TM9SF3Q9HD45 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.52■■□□□ 1.04
TM9SF3Q9HD45 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TM9SF3Q9HD45 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TM9SF3Q9HD45 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.52■■□□□ 1.04
TM9SF3Q9HD45 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
TM9SF3Q9HD45 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
TM9SF3Q9HD45 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
TM9SF3Q9HD45 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TM9SF3Q9HD45 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TM9SF3Q9HD45 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TM9SF3Q9HD45 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
TM9SF3Q9HD45 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TM9SF3Q9HD45 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TM9SF3Q9HD45 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TM9SF3Q9HD45 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
TM9SF3Q9HD45 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.51■■□□□ 1.03
TM9SF3Q9HD45 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
TM9SF3Q9HD45 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TM9SF3Q9HD45 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
TM9SF3Q9HD45 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TM9SF3Q9HD45 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
TM9SF3Q9HD45 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.5■■□□□ 1.03
TM9SF3Q9HD45 AC005224.4-201ENST00000583262 1652 ntBASIC21.5■■□□□ 1.03
TM9SF3Q9HD45 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.5■■□□□ 1.03
TM9SF3Q9HD45 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
TM9SF3Q9HD45 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TM9SF3Q9HD45 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.5■■□□□ 1.03
TM9SF3Q9HD45 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TM9SF3Q9HD45 AL109923.1-201ENST00000618799 583 ntBASIC21.5■■□□□ 1.03
TM9SF3Q9HD45 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
TM9SF3Q9HD45 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TM9SF3Q9HD45 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
TM9SF3Q9HD45 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TM9SF3Q9HD45 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TM9SF3Q9HD45 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.49■■□□□ 1.03
TM9SF3Q9HD45 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TM9SF3Q9HD45 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.49■■□□□ 1.03
TM9SF3Q9HD45 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TM9SF3Q9HD45 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.49■■□□□ 1.03
TM9SF3Q9HD45 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms