Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC087623.3-201ENST00000607047 1098 ntBASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTCHD1Q96NR3 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 AC139530.1-201ENST00000575312 1977 ntBASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTCHD1Q96NR3 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.27■□□□□ 0.84
PTCHD1Q96NR3 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD1Q96NR3 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
PTCHD1Q96NR3 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
PTCHD1Q96NR3 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD1Q96NR3 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.27■□□□□ 0.84
PTCHD1Q96NR3 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD1Q96NR3 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD1Q96NR3 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTCHD1Q96NR3 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
PTCHD1Q96NR3 MIR5787-201ENST00000611784 55 ntBASIC20.27■□□□□ 0.84
PTCHD1Q96NR3 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.27■□□□□ 0.84
PTCHD1Q96NR3 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PTCHD1Q96NR3 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PTCHD1Q96NR3 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
PTCHD1Q96NR3 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 GUSBP5-202ENST00000510805 1989 ntBASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 LINC02228-203ENST00000641970 1355 ntBASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 AC127496.7-201ENST00000625110 1798 ntBASIC20.26■□□□□ 0.83
PTCHD1Q96NR3 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 EP400NL-214ENST00000641289 2402 ntBASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTCHD1Q96NR3 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD1Q96NR3 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD1Q96NR3 AP004607.7-201ENST00000527152 1677 ntBASIC20.24■□□□□ 0.83
PTCHD1Q96NR3 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.24■□□□□ 0.83
PTCHD1Q96NR3 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD1Q96NR3 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.24■□□□□ 0.83
PTCHD1Q96NR3 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD1Q96NR3 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD1Q96NR3 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD1Q96NR3 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD1Q96NR3 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD1Q96NR3 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTCHD1Q96NR3 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 AC080038.3-201ENST00000623346 1952 ntBASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 CCDC92B-201ENST00000575506 885 ntBASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 TPRG1LP1-201ENST00000598702 760 ntBASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 AC079834.2-201ENST00000609776 1949 ntBASIC20.23■□□□□ 0.83
PTCHD1Q96NR3 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTCHD1Q96NR3 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTCHD1Q96NR3 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
PTCHD1Q96NR3 AC034268.1-201ENST00000441047 882 ntBASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms