Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CFAP54Q96N23 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.37■■□□□ 1.01
CFAP54Q96N23 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CFAP54Q96N23 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CFAP54Q96N23 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CFAP54Q96N23 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CFAP54Q96N23 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.37■■□□□ 1.01
CFAP54Q96N23 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CFAP54Q96N23 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.37■■□□□ 1.01
CFAP54Q96N23 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.37■■□□□ 1.01
CFAP54Q96N23 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CFAP54Q96N23 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CFAP54Q96N23 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CFAP54Q96N23 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CFAP54Q96N23 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CFAP54Q96N23 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.36■■□□□ 1.01
CFAP54Q96N23 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.36■■□□□ 1.01
CFAP54Q96N23 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CFAP54Q96N23 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CFAP54Q96N23 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CFAP54Q96N23 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
CFAP54Q96N23 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CFAP54Q96N23 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CFAP54Q96N23 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CFAP54Q96N23 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.36■■□□□ 1.01
CFAP54Q96N23 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CFAP54Q96N23 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CFAP54Q96N23 AC013268.1-206ENST00000638368 961 ntBASIC21.36■■□□□ 1.01
CFAP54Q96N23 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.36■■□□□ 1.01
CFAP54Q96N23 AC112229.1-201ENST00000639295 961 ntBASIC21.36■■□□□ 1.01
CFAP54Q96N23 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
CFAP54Q96N23 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CFAP54Q96N23 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CFAP54Q96N23 TMPOP1-202ENST00000424642 1267 ntBASIC21.35■■□□□ 1.01
CFAP54Q96N23 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.35■■□□□ 1.01
CFAP54Q96N23 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CFAP54Q96N23 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.35■■□□□ 1.01
CFAP54Q96N23 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CFAP54Q96N23 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CFAP54Q96N23 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CFAP54Q96N23 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
CFAP54Q96N23 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.35■■□□□ 1.01
CFAP54Q96N23 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CFAP54Q96N23 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC21.35■■□□□ 1.01
CFAP54Q96N23 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.35■■□□□ 1.01
CFAP54Q96N23 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.35■■□□□ 1.01
CFAP54Q96N23 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.34■■□□□ 1.01
CFAP54Q96N23 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
CFAP54Q96N23 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CFAP54Q96N23 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.34■■□□□ 1.01
CFAP54Q96N23 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CFAP54Q96N23 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CFAP54Q96N23 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CFAP54Q96N23 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CFAP54Q96N23 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CFAP54Q96N23 POU5F1P4-201ENST00000413175 1085 ntBASIC21.34■■□□□ 1.01
CFAP54Q96N23 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.34■■□□□ 1.01
CFAP54Q96N23 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.34■■□□□ 1.01
CFAP54Q96N23 DUSP8P4-201ENST00000399538 1761 ntBASIC21.33■■□□□ 1.01
CFAP54Q96N23 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
CFAP54Q96N23 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CFAP54Q96N23 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CFAP54Q96N23 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CFAP54Q96N23 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.33■■□□□ 1.01
CFAP54Q96N23 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CFAP54Q96N23 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CFAP54Q96N23 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CFAP54Q96N23 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
CFAP54Q96N23 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.33■■□□□ 1
CFAP54Q96N23 BX276092.2-201ENST00000417668 665 ntBASIC21.33■■□□□ 1
CFAP54Q96N23 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.33■■□□□ 1
CFAP54Q96N23 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
CFAP54Q96N23 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.32■■□□□ 1
CFAP54Q96N23 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.32■■□□□ 1
CFAP54Q96N23 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.32■■□□□ 1
CFAP54Q96N23 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CFAP54Q96N23 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CFAP54Q96N23 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CFAP54Q96N23 AC091874.3-201ENST00000512672 1195 ntBASIC21.32■■□□□ 1
CFAP54Q96N23 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CFAP54Q96N23 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CFAP54Q96N23 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.32■■□□□ 1
CFAP54Q96N23 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.32■■□□□ 1
CFAP54Q96N23 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
CFAP54Q96N23 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CFAP54Q96N23 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
CFAP54Q96N23 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.31■■□□□ 1
CFAP54Q96N23 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.31■■□□□ 1
CFAP54Q96N23 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.31■■□□□ 1
CFAP54Q96N23 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CFAP54Q96N23 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.31■■□□□ 1
CFAP54Q96N23 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CFAP54Q96N23 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CFAP54Q96N23 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.31■■□□□ 1
CFAP54Q96N23 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CFAP54Q96N23 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CFAP54Q96N23 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.31■■□□□ 1
CFAP54Q96N23 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.31■■□□□ 1
CFAP54Q96N23 AC007322.4-201ENST00000509611 723 ntBASIC21.31■■□□□ 1
CFAP54Q96N23 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms