Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
ZNF560Q96MR9 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
ZNF560Q96MR9 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
ZNF560Q96MR9 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 PXK-203ENST00000383715 1756 ntTSL 5 BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 NTF6G-201ENST00000591094 616 ntBASIC23.07■■□□□ 1.28
ZNF560Q96MR9 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
ZNF560Q96MR9 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
ZNF560Q96MR9 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
ZNF560Q96MR9 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
ZNF560Q96MR9 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
ZNF560Q96MR9 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
ZNF560Q96MR9 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC23.06■■□□□ 1.28
ZNF560Q96MR9 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC23.06■■□□□ 1.28
ZNF560Q96MR9 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
ZNF560Q96MR9 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
ZNF560Q96MR9 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
ZNF560Q96MR9 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC23.06■■□□□ 1.28
ZNF560Q96MR9 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 GLI3-203ENST00000437480 451 ntTSL 2 BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
ZNF560Q96MR9 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
ZNF560Q96MR9 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC23.04■■□□□ 1.28
ZNF560Q96MR9 AC055733.4-201ENST00000638462 1354 ntBASIC23.04■■□□□ 1.28
ZNF560Q96MR9 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
ZNF560Q96MR9 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
ZNF560Q96MR9 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
ZNF560Q96MR9 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC23.04■■□□□ 1.28
ZNF560Q96MR9 COX20-201ENST00000366528 568 ntTSL 2 BASIC23.04■■□□□ 1.28
ZNF560Q96MR9 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC23.04■■□□□ 1.28
ZNF560Q96MR9 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.04■■□□□ 1.28
ZNF560Q96MR9 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC23.04■■□□□ 1.28
ZNF560Q96MR9 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
ZNF560Q96MR9 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
ZNF560Q96MR9 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
ZNF560Q96MR9 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC23.03■■□□□ 1.28
ZNF560Q96MR9 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
ZNF560Q96MR9 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
ZNF560Q96MR9 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
ZNF560Q96MR9 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
ZNF560Q96MR9 AC080038.3-201ENST00000623346 1952 ntBASIC23.03■■□□□ 1.28
ZNF560Q96MR9 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
ZNF560Q96MR9 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
ZNF560Q96MR9 AP006587.3-201ENST00000525742 1516 ntBASIC23.03■■□□□ 1.28
ZNF560Q96MR9 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 FXN-202ENST00000396364 980 ntTSL 5 BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC23.02■■□□□ 1.28
ZNF560Q96MR9 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
ZNF560Q96MR9 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
ZNF560Q96MR9 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
ZNF560Q96MR9 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
ZNF560Q96MR9 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.01■■□□□ 1.27
ZNF560Q96MR9 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
ZNF560Q96MR9 AC068473.5-201ENST00000616428 2072 ntBASIC23.01■■□□□ 1.27
ZNF560Q96MR9 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC23.01■■□□□ 1.27
ZNF560Q96MR9 KRT87P-202ENST00000534226 1464 ntBASIC23.01■■□□□ 1.27
ZNF560Q96MR9 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
ZNF560Q96MR9 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC23.01■■□□□ 1.27
ZNF560Q96MR9 GXYLT1P2-201ENST00000433312 1230 ntBASIC23.01■■□□□ 1.27
ZNF560Q96MR9 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms