Protein–RNA interactions for Protein: Q92544

TM9SF4, Transmembrane 9 superfamily member 4, humanhuman

Predictions only

Length 642 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4Q92544 ECEL1P1-201ENST00000373592 1742 ntBASIC20.29■□□□□ 0.84
TM9SF4Q92544 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TM9SF4Q92544 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TM9SF4Q92544 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.29■□□□□ 0.84
TM9SF4Q92544 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TM9SF4Q92544 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TM9SF4Q92544 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TM9SF4Q92544 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TM9SF4Q92544 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.29■□□□□ 0.84
TM9SF4Q92544 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TM9SF4Q92544 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.28■□□□□ 0.84
TM9SF4Q92544 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
TM9SF4Q92544 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
TM9SF4Q92544 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.28■□□□□ 0.84
TM9SF4Q92544 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
TM9SF4Q92544 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.28■□□□□ 0.84
TM9SF4Q92544 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
TM9SF4Q92544 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TM9SF4Q92544 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TM9SF4Q92544 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TM9SF4Q92544 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TM9SF4Q92544 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.27■□□□□ 0.84
TM9SF4Q92544 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TM9SF4Q92544 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TM9SF4Q92544 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.27■□□□□ 0.84
TM9SF4Q92544 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TM9SF4Q92544 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TM9SF4Q92544 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.27■□□□□ 0.84
TM9SF4Q92544 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.27■□□□□ 0.84
TM9SF4Q92544 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.27■□□□□ 0.84
TM9SF4Q92544 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.27■□□□□ 0.84
TM9SF4Q92544 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TM9SF4Q92544 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
TM9SF4Q92544 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
TM9SF4Q92544 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TM9SF4Q92544 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
TM9SF4Q92544 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.27■□□□□ 0.83
TM9SF4Q92544 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
TM9SF4Q92544 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TM9SF4Q92544 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.26■□□□□ 0.83
TM9SF4Q92544 AC127496.7-201ENST00000625110 1798 ntBASIC20.26■□□□□ 0.83
TM9SF4Q92544 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.26■□□□□ 0.83
TM9SF4Q92544 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.26■□□□□ 0.83
TM9SF4Q92544 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TM9SF4Q92544 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF4Q92544 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF4Q92544 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.26■□□□□ 0.83
TM9SF4Q92544 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.26■□□□□ 0.83
TM9SF4Q92544 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF4Q92544 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TM9SF4Q92544 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.26■□□□□ 0.83
TM9SF4Q92544 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF4Q92544 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.25■□□□□ 0.83
TM9SF4Q92544 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
TM9SF4Q92544 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF4Q92544 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TM9SF4Q92544 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.25■□□□□ 0.83
TM9SF4Q92544 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF4Q92544 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.25■□□□□ 0.83
TM9SF4Q92544 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.25■□□□□ 0.83
TM9SF4Q92544 AC137767.1-201ENST00000602918 1920 ntBASIC20.25■□□□□ 0.83
TM9SF4Q92544 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF4Q92544 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF4Q92544 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF4Q92544 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TM9SF4Q92544 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TM9SF4Q92544 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TM9SF4Q92544 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TM9SF4Q92544 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
TM9SF4Q92544 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
TM9SF4Q92544 ID1-201ENST00000376105 1233 ntBASIC20.24■□□□□ 0.83
TM9SF4Q92544 AC016769.1-201ENST00000409132 1010 ntBASIC20.24■□□□□ 0.83
TM9SF4Q92544 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.24■□□□□ 0.83
TM9SF4Q92544 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.24■□□□□ 0.83
TM9SF4Q92544 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.24■□□□□ 0.83
TM9SF4Q92544 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TM9SF4Q92544 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
TM9SF4Q92544 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF4Q92544 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF4Q92544 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF4Q92544 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF4Q92544 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
TM9SF4Q92544 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.23■□□□□ 0.83
TM9SF4Q92544 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TM9SF4Q92544 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
TM9SF4Q92544 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.23■□□□□ 0.83
TM9SF4Q92544 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms