Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.54■□□□□ 0.88
PPP4R4Q6NUP7 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PPP4R4Q6NUP7 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.54■□□□□ 0.88
PPP4R4Q6NUP7 AL356740.2-201ENST00000601559 647 ntBASIC20.54■□□□□ 0.88
PPP4R4Q6NUP7 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PPP4R4Q6NUP7 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PPP4R4Q6NUP7 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PPP4R4Q6NUP7 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
PPP4R4Q6NUP7 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 AC008406.3-201ENST00000620001 1374 ntBASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PPP4R4Q6NUP7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
PPP4R4Q6NUP7 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PPP4R4Q6NUP7 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PPP4R4Q6NUP7 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
PPP4R4Q6NUP7 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PPP4R4Q6NUP7 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.52■□□□□ 0.88
PPP4R4Q6NUP7 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.52■□□□□ 0.88
PPP4R4Q6NUP7 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PPP4R4Q6NUP7 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PPP4R4Q6NUP7 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.52■□□□□ 0.88
PPP4R4Q6NUP7 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
PPP4R4Q6NUP7 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.52■□□□□ 0.88
PPP4R4Q6NUP7 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PPP4R4Q6NUP7 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
PPP4R4Q6NUP7 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
PPP4R4Q6NUP7 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 MIR6722-201ENST00000617286 78 ntBASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 AL117332.1-201ENST00000622628 974 ntBASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 AC244015.2-201ENST00000616358 1861 ntBASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PPP4R4Q6NUP7 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
PPP4R4Q6NUP7 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
PPP4R4Q6NUP7 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PPP4R4Q6NUP7 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.5■□□□□ 0.87
PPP4R4Q6NUP7 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PPP4R4Q6NUP7 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.5■□□□□ 0.87
PPP4R4Q6NUP7 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.5■□□□□ 0.87
PPP4R4Q6NUP7 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
PPP4R4Q6NUP7 AC005703.6-201ENST00000623265 1329 ntBASIC20.5■□□□□ 0.87
PPP4R4Q6NUP7 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PPP4R4Q6NUP7 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PPP4R4Q6NUP7 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PPP4R4Q6NUP7 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PPP4R4Q6NUP7 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PPP4R4Q6NUP7 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.49■□□□□ 0.87
PPP4R4Q6NUP7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PPP4R4Q6NUP7 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.49■□□□□ 0.87
PPP4R4Q6NUP7 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.49■□□□□ 0.87
PPP4R4Q6NUP7 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.49■□□□□ 0.87
PPP4R4Q6NUP7 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PPP4R4Q6NUP7 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
PPP4R4Q6NUP7 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PPP4R4Q6NUP7 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.48■□□□□ 0.87
PPP4R4Q6NUP7 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PPP4R4Q6NUP7 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.48■□□□□ 0.87
PPP4R4Q6NUP7 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.48■□□□□ 0.87
PPP4R4Q6NUP7 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
PPP4R4Q6NUP7 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PPP4R4Q6NUP7 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PPP4R4Q6NUP7 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PPP4R4Q6NUP7 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
PPP4R4Q6NUP7 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PPP4R4Q6NUP7 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PPP4R4Q6NUP7 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
PPP4R4Q6NUP7 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.47■□□□□ 0.87
PPP4R4Q6NUP7 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.47■□□□□ 0.87
PPP4R4Q6NUP7 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.47■□□□□ 0.87
PPP4R4Q6NUP7 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.47■□□□□ 0.87
PPP4R4Q6NUP7 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
PPP4R4Q6NUP7 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms