Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL28A1Q2UY09 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL28A1Q2UY09 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
COL28A1Q2UY09 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL28A1Q2UY09 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL28A1Q2UY09 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL28A1Q2UY09 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL28A1Q2UY09 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL28A1Q2UY09 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL28A1Q2UY09 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL28A1Q2UY09 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 AC073210.2-201ENST00000430369 194 ntBASIC20.66■□□□□ 0.9
COL28A1Q2UY09 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 AC098590.1-201ENST00000468126 897 ntBASIC20.66■□□□□ 0.9
COL28A1Q2UY09 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
COL28A1Q2UY09 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL28A1Q2UY09 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL28A1Q2UY09 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL28A1Q2UY09 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.65■□□□□ 0.9
COL28A1Q2UY09 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
COL28A1Q2UY09 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
COL28A1Q2UY09 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
COL28A1Q2UY09 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL28A1Q2UY09 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL28A1Q2UY09 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL28A1Q2UY09 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL28A1Q2UY09 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.64■□□□□ 0.89
COL28A1Q2UY09 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL28A1Q2UY09 DUSP5P2-201ENST00000426873 1033 ntBASIC20.64■□□□□ 0.89
COL28A1Q2UY09 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.64■□□□□ 0.89
COL28A1Q2UY09 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.64■□□□□ 0.89
COL28A1Q2UY09 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.64■□□□□ 0.89
COL28A1Q2UY09 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL28A1Q2UY09 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.64■□□□□ 0.89
COL28A1Q2UY09 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
COL28A1Q2UY09 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL28A1Q2UY09 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL28A1Q2UY09 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
COL28A1Q2UY09 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL28A1Q2UY09 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL28A1Q2UY09 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL28A1Q2UY09 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL28A1Q2UY09 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
COL28A1Q2UY09 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL28A1Q2UY09 DUX4L16-201ENST00000555130 1264 ntBASIC20.62■□□□□ 0.89
COL28A1Q2UY09 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.62■□□□□ 0.89
COL28A1Q2UY09 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL28A1Q2UY09 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
COL28A1Q2UY09 BX005040.4-201ENST00000637145 1518 ntBASIC20.62■□□□□ 0.89
COL28A1Q2UY09 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL28A1Q2UY09 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.62■□□□□ 0.89
COL28A1Q2UY09 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 MIR1224-201ENST00000408193 85 ntBASIC20.61■□□□□ 0.89
COL28A1Q2UY09 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 RPS2P4-201ENST00000476944 856 ntBASIC20.61■□□□□ 0.89
COL28A1Q2UY09 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL28A1Q2UY09 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms