Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.5■□□□□ 0.87
RAE1P78406 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.5■□□□□ 0.87
RAE1P78406 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.5■□□□□ 0.87
RAE1P78406 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.5■□□□□ 0.87
RAE1P78406 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RAE1P78406 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RAE1P78406 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
RAE1P78406 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
RAE1P78406 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RAE1P78406 AC244015.2-201ENST00000616358 1861 ntBASIC20.5■□□□□ 0.87
RAE1P78406 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RAE1P78406 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RAE1P78406 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RAE1P78406 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RAE1P78406 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RAE1P78406 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.49■□□□□ 0.87
RAE1P78406 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RAE1P78406 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.49■□□□□ 0.87
RAE1P78406 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
RAE1P78406 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RAE1P78406 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RAE1P78406 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
RAE1P78406 BX842568.3-201ENST00000418104 571 ntBASIC20.49■□□□□ 0.87
RAE1P78406 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.49■□□□□ 0.87
RAE1P78406 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RAE1P78406 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RAE1P78406 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
RAE1P78406 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RAE1P78406 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.49■□□□□ 0.87
RAE1P78406 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
RAE1P78406 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RAE1P78406 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RAE1P78406 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RAE1P78406 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.48■□□□□ 0.87
RAE1P78406 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RAE1P78406 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RAE1P78406 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.48■□□□□ 0.87
RAE1P78406 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.48■□□□□ 0.87
RAE1P78406 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.48■□□□□ 0.87
RAE1P78406 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
RAE1P78406 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.48■□□□□ 0.87
RAE1P78406 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RAE1P78406 AL137060.1-201ENST00000618151 2648 ntBASIC20.48■□□□□ 0.87
RAE1P78406 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RAE1P78406 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RAE1P78406 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RAE1P78406 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.48■□□□□ 0.87
RAE1P78406 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RAE1P78406 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RAE1P78406 AC008406.3-201ENST00000620001 1374 ntBASIC20.47■□□□□ 0.87
RAE1P78406 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RAE1P78406 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.47■□□□□ 0.87
RAE1P78406 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RAE1P78406 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RAE1P78406 AC135279.3-201ENST00000610945 1311 ntBASIC20.47■□□□□ 0.87
RAE1P78406 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RAE1P78406 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RAE1P78406 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.46■□□□□ 0.87
RAE1P78406 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RAE1P78406 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RAE1P78406 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.46■□□□□ 0.87
RAE1P78406 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.46■□□□□ 0.87
RAE1P78406 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.46■□□□□ 0.87
RAE1P78406 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.46■□□□□ 0.87
RAE1P78406 AC133561.4-201ENST00000566112 224 ntBASIC20.46■□□□□ 0.87
RAE1P78406 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.46■□□□□ 0.87
RAE1P78406 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RAE1P78406 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.46■□□□□ 0.87
RAE1P78406 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
RAE1P78406 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
RAE1P78406 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
RAE1P78406 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
RAE1P78406 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RAE1P78406 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RAE1P78406 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
RAE1P78406 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RAE1P78406 AC096631.2-201ENST00000436136 790 ntBASIC20.45■□□□□ 0.86
RAE1P78406 AC233992.3-201ENST00000607491 485 ntBASIC20.45■□□□□ 0.86
RAE1P78406 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RAE1P78406 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.45■□□□□ 0.86
RAE1P78406 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.45■□□□□ 0.86
RAE1P78406 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RAE1P78406 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
RAE1P78406 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RAE1P78406 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RAE1P78406 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.45■□□□□ 0.86
RAE1P78406 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RAE1P78406 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RAE1P78406 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
RAE1P78406 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.44■□□□□ 0.86
RAE1P78406 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RAE1P78406 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.44■□□□□ 0.86
RAE1P78406 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RAE1P78406 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.44■□□□□ 0.86
RAE1P78406 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
RAE1P78406 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RAE1P78406 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.44■□□□□ 0.86
RAE1P78406 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.43■□□□□ 0.86
RAE1P78406 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RAE1P78406 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms