Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.82■■□□□ 1.08
TNFRSF4P43489 AC005181.1-201ENST00000604782 1256 ntBASIC21.82■■□□□ 1.08
TNFRSF4P43489 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TNFRSF4P43489 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
TNFRSF4P43489 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TNFRSF4P43489 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
TNFRSF4P43489 AC083906.2-201ENST00000511578 360 ntBASIC21.81■■□□□ 1.08
TNFRSF4P43489 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TNFRSF4P43489 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.81■■□□□ 1.08
TNFRSF4P43489 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
TNFRSF4P43489 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.81■■□□□ 1.08
TNFRSF4P43489 AL050303.2-201ENST00000619798 666 ntBASIC21.81■■□□□ 1.08
TNFRSF4P43489 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TNFRSF4P43489 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.81■■□□□ 1.08
TNFRSF4P43489 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
TNFRSF4P43489 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.81■■□□□ 1.08
TNFRSF4P43489 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TNFRSF4P43489 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.81■■□□□ 1.08
TNFRSF4P43489 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
TNFRSF4P43489 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
TNFRSF4P43489 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
TNFRSF4P43489 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TNFRSF4P43489 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TNFRSF4P43489 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
TNFRSF4P43489 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
TNFRSF4P43489 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TNFRSF4P43489 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.8■■□□□ 1.08
TNFRSF4P43489 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.8■■□□□ 1.08
TNFRSF4P43489 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.8■■□□□ 1.08
TNFRSF4P43489 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
TNFRSF4P43489 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TNFRSF4P43489 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.8■■□□□ 1.08
TNFRSF4P43489 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.79■■□□□ 1.08
TNFRSF4P43489 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.79■■□□□ 1.08
TNFRSF4P43489 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
TNFRSF4P43489 AC142086.2-201ENST00000569753 217 ntBASIC21.79■■□□□ 1.08
TNFRSF4P43489 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TNFRSF4P43489 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.79■■□□□ 1.08
TNFRSF4P43489 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
TNFRSF4P43489 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TNFRSF4P43489 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.78■■□□□ 1.08
TNFRSF4P43489 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
TNFRSF4P43489 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
TNFRSF4P43489 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.78■■□□□ 1.08
TNFRSF4P43489 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
TNFRSF4P43489 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.78■■□□□ 1.08
TNFRSF4P43489 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TNFRSF4P43489 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TNFRSF4P43489 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
TNFRSF4P43489 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TNFRSF4P43489 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
TNFRSF4P43489 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TNFRSF4P43489 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.77■■□□□ 1.08
TNFRSF4P43489 TSPY6P-201ENST00000448518 926 ntBASIC21.77■■□□□ 1.08
TNFRSF4P43489 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.77■■□□□ 1.08
TNFRSF4P43489 EEF1DP3-203ENST00000566025 782 ntBASIC21.77■■□□□ 1.08
TNFRSF4P43489 SLC7A5P1-201ENST00000568957 537 ntBASIC21.77■■□□□ 1.08
TNFRSF4P43489 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TNFRSF4P43489 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TNFRSF4P43489 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.77■■□□□ 1.08
TNFRSF4P43489 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
TNFRSF4P43489 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
TNFRSF4P43489 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
TNFRSF4P43489 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
TNFRSF4P43489 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.76■■□□□ 1.07
TNFRSF4P43489 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.76■■□□□ 1.07
TNFRSF4P43489 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TNFRSF4P43489 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.76■■□□□ 1.07
TNFRSF4P43489 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TNFRSF4P43489 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.76■■□□□ 1.07
TNFRSF4P43489 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TNFRSF4P43489 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
TNFRSF4P43489 SLC7A5P2-201ENST00000553010 536 ntBASIC21.76■■□□□ 1.07
TNFRSF4P43489 AC053503.5-201ENST00000601508 636 ntBASIC21.76■■□□□ 1.07
TNFRSF4P43489 AC010536.3-201ENST00000620306 533 ntBASIC21.76■■□□□ 1.07
TNFRSF4P43489 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.76■■□□□ 1.07
TNFRSF4P43489 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.76■■□□□ 1.07
TNFRSF4P43489 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.76■■□□□ 1.07
TNFRSF4P43489 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TNFRSF4P43489 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TNFRSF4P43489 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TNFRSF4P43489 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.75■■□□□ 1.07
TNFRSF4P43489 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TNFRSF4P43489 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TNFRSF4P43489 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TNFRSF4P43489 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.75■■□□□ 1.07
TNFRSF4P43489 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
TNFRSF4P43489 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.75■■□□□ 1.07
TNFRSF4P43489 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
TNFRSF4P43489 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TNFRSF4P43489 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TNFRSF4P43489 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TNFRSF4P43489 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TNFRSF4P43489 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TNFRSF4P43489 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TNFRSF4P43489 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.74■■□□□ 1.07
TNFRSF4P43489 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.74■■□□□ 1.07
TNFRSF4P43489 CNN2P6-201ENST00000439038 900 ntBASIC21.74■■□□□ 1.07
TNFRSF4P43489 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.74■■□□□ 1.07
TNFRSF4P43489 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms