Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SOX3P41225 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.19■□□□□ 0.82
SOX3P41225 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SOX3P41225 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
SOX3P41225 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SOX3P41225 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SOX3P41225 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SOX3P41225 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.19■□□□□ 0.82
SOX3P41225 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SOX3P41225 AC026271.2-201ENST00000428091 497 ntBASIC20.19■□□□□ 0.82
SOX3P41225 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SOX3P41225 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
SOX3P41225 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SOX3P41225 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
SOX3P41225 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
SOX3P41225 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SOX3P41225 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
SOX3P41225 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SOX3P41225 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SOX3P41225 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SOX3P41225 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.19■□□□□ 0.82
SOX3P41225 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.18■□□□□ 0.82
SOX3P41225 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.18■□□□□ 0.82
SOX3P41225 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SOX3P41225 AL031602.1-201ENST00000633169 911 ntBASIC20.18■□□□□ 0.82
SOX3P41225 AC068587.7-201ENST00000641602 218 ntBASIC20.18■□□□□ 0.82
SOX3P41225 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.18■□□□□ 0.82
SOX3P41225 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SOX3P41225 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SOX3P41225 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SOX3P41225 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SOX3P41225 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
SOX3P41225 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SOX3P41225 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SOX3P41225 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SOX3P41225 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SOX3P41225 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SOX3P41225 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.17■□□□□ 0.82
SOX3P41225 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
SOX3P41225 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SOX3P41225 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SOX3P41225 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.17■□□□□ 0.82
SOX3P41225 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.17■□□□□ 0.82
SOX3P41225 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SOX3P41225 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.17■□□□□ 0.82
SOX3P41225 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SOX3P41225 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.17■□□□□ 0.82
SOX3P41225 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.17■□□□□ 0.82
SOX3P41225 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.17■□□□□ 0.82
SOX3P41225 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.17■□□□□ 0.82
SOX3P41225 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.17■□□□□ 0.82
SOX3P41225 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SOX3P41225 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SOX3P41225 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SOX3P41225 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.16■□□□□ 0.82
SOX3P41225 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
SOX3P41225 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SOX3P41225 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SOX3P41225 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.16■□□□□ 0.82
SOX3P41225 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.16■□□□□ 0.82
SOX3P41225 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SOX3P41225 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SOX3P41225 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SOX3P41225 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SOX3P41225 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.16■□□□□ 0.82
SOX3P41225 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.16■□□□□ 0.82
SOX3P41225 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SOX3P41225 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
SOX3P41225 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SOX3P41225 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SOX3P41225 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.16■□□□□ 0.82
SOX3P41225 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SOX3P41225 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.15■□□□□ 0.82
SOX3P41225 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SOX3P41225 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SOX3P41225 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.15■□□□□ 0.82
SOX3P41225 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.15■□□□□ 0.82
SOX3P41225 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.15■□□□□ 0.82
SOX3P41225 AC012414.1-201ENST00000556676 535 ntBASIC20.15■□□□□ 0.82
SOX3P41225 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.15■□□□□ 0.82
SOX3P41225 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.15■□□□□ 0.82
SOX3P41225 AC087239.1-201ENST00000622671 572 ntBASIC20.15■□□□□ 0.82
SOX3P41225 AL358852.1-201ENST00000623174 1268 ntBASIC20.15■□□□□ 0.82
SOX3P41225 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.15■□□□□ 0.82
SOX3P41225 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SOX3P41225 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SOX3P41225 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SOX3P41225 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SOX3P41225 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SOX3P41225 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SOX3P41225 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.82
SOX3P41225 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
SOX3P41225 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SOX3P41225 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
SOX3P41225 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SOX3P41225 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.14■□□□□ 0.81
SOX3P41225 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.14■□□□□ 0.81
SOX3P41225 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.14■□□□□ 0.81
SOX3P41225 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SOX3P41225 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms