Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ITM2C-210ENST00000620962 501 ntBASIC28.87■■■□□ 2.21
COL18A1P39060 LINC01960-201ENST00000563759 1884 ntBASIC28.87■■■□□ 2.21
COL18A1P39060 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC28.87■■■□□ 2.21
COL18A1P39060 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC28.87■■■□□ 2.21
COL18A1P39060 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC28.86■■■□□ 2.21
COL18A1P39060 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
COL18A1P39060 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
COL18A1P39060 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC28.86■■■□□ 2.21
COL18A1P39060 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC28.86■■■□□ 2.21
COL18A1P39060 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
COL18A1P39060 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
COL18A1P39060 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
COL18A1P39060 PLLP-204ENST00000569059 665 ntTSL 3 BASIC28.86■■■□□ 2.21
COL18A1P39060 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
COL18A1P39060 NAA20-201ENST00000310450 920 ntTSL 2 BASIC28.85■■■□□ 2.21
COL18A1P39060 POU5F1P3-201ENST00000428824 1078 ntBASIC28.85■■■□□ 2.21
COL18A1P39060 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC28.85■■■□□ 2.21
COL18A1P39060 AC079089.2-201ENST00000531211 1277 ntBASIC28.85■■■□□ 2.21
COL18A1P39060 PHB2-213ENST00000546111 858 ntTSL 2 BASIC28.85■■■□□ 2.21
COL18A1P39060 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC28.85■■■□□ 2.21
COL18A1P39060 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
COL18A1P39060 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC28.85■■■□□ 2.21
COL18A1P39060 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
COL18A1P39060 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC28.85■■■□□ 2.21
COL18A1P39060 AC092068.2-201ENST00000590491 1708 ntBASIC28.85■■■□□ 2.21
COL18A1P39060 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC28.85■■■□□ 2.21
COL18A1P39060 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
COL18A1P39060 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC28.85■■■□□ 2.21
COL18A1P39060 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
COL18A1P39060 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC28.85■■■□□ 2.21
COL18A1P39060 SLC7A5P1-201ENST00000568957 537 ntBASIC28.85■■■□□ 2.21
COL18A1P39060 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC28.85■■■□□ 2.21
COL18A1P39060 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC28.84■■■□□ 2.21
COL18A1P39060 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
COL18A1P39060 AC083880.1-201ENST00000608266 535 ntBASIC28.84■■■□□ 2.21
COL18A1P39060 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC28.84■■■□□ 2.21
COL18A1P39060 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC28.84■■■□□ 2.21
COL18A1P39060 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC28.83■■■□□ 2.21
COL18A1P39060 AC098590.1-201ENST00000468126 897 ntBASIC28.83■■■□□ 2.21
COL18A1P39060 DET1-205ENST00000558413 583 ntTSL 4 BASIC28.83■■■□□ 2.21
COL18A1P39060 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC28.83■■■□□ 2.21
COL18A1P39060 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
COL18A1P39060 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC28.83■■■□□ 2.21
COL18A1P39060 AP004607.7-201ENST00000527152 1677 ntBASIC28.83■■■□□ 2.21
COL18A1P39060 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC28.83■■■□□ 2.21
COL18A1P39060 PREB-202ENST00000406567 1910 ntTSL 5 BASIC28.82■■■□□ 2.2
COL18A1P39060 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
COL18A1P39060 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
COL18A1P39060 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC28.82■■■□□ 2.2
COL18A1P39060 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC28.82■■■□□ 2.2
COL18A1P39060 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
COL18A1P39060 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
COL18A1P39060 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC28.81■■■□□ 2.2
COL18A1P39060 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
COL18A1P39060 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
COL18A1P39060 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
COL18A1P39060 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
COL18A1P39060 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC28.8■■■□□ 2.2
COL18A1P39060 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC28.8■■■□□ 2.2
COL18A1P39060 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC28.8■■■□□ 2.2
COL18A1P39060 AP006587.3-201ENST00000525742 1516 ntBASIC28.8■■■□□ 2.2
COL18A1P39060 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC28.8■■■□□ 2.2
COL18A1P39060 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC28.8■■■□□ 2.2
COL18A1P39060 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
COL18A1P39060 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
COL18A1P39060 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
COL18A1P39060 PPP1R14BP2-201ENST00000426284 444 ntBASIC28.8■■■□□ 2.2
COL18A1P39060 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC28.8■■■□□ 2.2
COL18A1P39060 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC28.8■■■□□ 2.2
COL18A1P39060 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC28.79■■■□□ 2.2
COL18A1P39060 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
COL18A1P39060 MKRN4P-201ENST00000444706 1521 ntBASIC28.79■■■□□ 2.2
COL18A1P39060 FXN-202ENST00000396364 980 ntTSL 5 BASIC28.79■■■□□ 2.2
COL18A1P39060 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC28.79■■■□□ 2.2
COL18A1P39060 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC28.79■■■□□ 2.2
COL18A1P39060 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC28.79■■■□□ 2.2
COL18A1P39060 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
COL18A1P39060 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
COL18A1P39060 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
COL18A1P39060 FAM201B-201ENST00000458407 597 ntBASIC28.78■■■□□ 2.2
COL18A1P39060 RNA5SP413-201ENST00000516373 109 ntBASIC28.78■■■□□ 2.2
COL18A1P39060 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
COL18A1P39060 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
COL18A1P39060 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC28.78■■■□□ 2.2
COL18A1P39060 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC28.78■■■□□ 2.2
COL18A1P39060 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC28.78■■■□□ 2.2
COL18A1P39060 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
COL18A1P39060 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC28.77■■■□□ 2.2
COL18A1P39060 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC28.77■■■□□ 2.2
COL18A1P39060 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC28.77■■■□□ 2.2
COL18A1P39060 RPS2P52-201ENST00000469610 820 ntBASIC28.77■■■□□ 2.2
COL18A1P39060 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
COL18A1P39060 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC28.77■■■□□ 2.2
COL18A1P39060 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC28.77■■■□□ 2.2
COL18A1P39060 MYC-209ENST00000641252 345 ntBASIC28.77■■■□□ 2.2
COL18A1P39060 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC28.77■■■□□ 2.2
COL18A1P39060 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
COL18A1P39060 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC28.77■■■□□ 2.2
COL18A1P39060 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
COL18A1P39060 PRORSD1P-201ENST00000295112 541 ntBASIC28.76■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms