Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.66■□□□□ 0.74
SPTA1P02549 AC016405.3-201ENST00000607710 860 ntBASIC19.66■□□□□ 0.74
SPTA1P02549 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SPTA1P02549 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SPTA1P02549 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SPTA1P02549 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SPTA1P02549 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
SPTA1P02549 AC068338.2-201ENST00000563278 1430 ntBASIC19.65■□□□□ 0.74
SPTA1P02549 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.65■□□□□ 0.74
SPTA1P02549 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SPTA1P02549 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.65■□□□□ 0.74
SPTA1P02549 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SPTA1P02549 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SPTA1P02549 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
SPTA1P02549 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SPTA1P02549 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SPTA1P02549 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SPTA1P02549 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SPTA1P02549 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.65■□□□□ 0.74
SPTA1P02549 AC007322.4-201ENST00000509611 723 ntBASIC19.65■□□□□ 0.74
SPTA1P02549 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SPTA1P02549 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SPTA1P02549 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SPTA1P02549 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SPTA1P02549 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SPTA1P02549 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SPTA1P02549 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SPTA1P02549 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SPTA1P02549 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.74
SPTA1P02549 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
SPTA1P02549 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
SPTA1P02549 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SPTA1P02549 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SPTA1P02549 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
SPTA1P02549 CYP2T1P-201ENST00000432607 1285 ntBASIC19.64■□□□□ 0.73
SPTA1P02549 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.64■□□□□ 0.73
SPTA1P02549 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.64■□□□□ 0.73
SPTA1P02549 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.64■□□□□ 0.73
SPTA1P02549 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.64■□□□□ 0.73
SPTA1P02549 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SPTA1P02549 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.63■□□□□ 0.73
SPTA1P02549 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.63■□□□□ 0.73
SPTA1P02549 AC010141.3-201ENST00000456659 717 ntBASIC19.63■□□□□ 0.73
SPTA1P02549 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.63■□□□□ 0.73
SPTA1P02549 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.63■□□□□ 0.73
SPTA1P02549 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SPTA1P02549 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SPTA1P02549 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC19.63■□□□□ 0.73
SPTA1P02549 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SPTA1P02549 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.63■□□□□ 0.73
SPTA1P02549 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.63■□□□□ 0.73
SPTA1P02549 AC026366.1-201ENST00000488803 879 ntBASIC19.63■□□□□ 0.73
SPTA1P02549 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.63■□□□□ 0.73
SPTA1P02549 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SPTA1P02549 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SPTA1P02549 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SPTA1P02549 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SPTA1P02549 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SPTA1P02549 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SPTA1P02549 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.62■□□□□ 0.73
SPTA1P02549 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SPTA1P02549 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.62■□□□□ 0.73
SPTA1P02549 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SPTA1P02549 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.61■□□□□ 0.73
SPTA1P02549 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SPTA1P02549 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.61■□□□□ 0.73
SPTA1P02549 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SPTA1P02549 OR10C1-204ENST00000622521 1039 ntBASIC19.61■□□□□ 0.73
SPTA1P02549 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SPTA1P02549 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SPTA1P02549 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SPTA1P02549 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SPTA1P02549 OXCT2P1-201ENST00000447263 1535 ntBASIC19.61■□□□□ 0.73
SPTA1P02549 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SPTA1P02549 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SPTA1P02549 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SPTA1P02549 MIR718-201ENST00000390190 70 ntBASIC19.6■□□□□ 0.73
SPTA1P02549 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.6■□□□□ 0.73
SPTA1P02549 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.6■□□□□ 0.73
SPTA1P02549 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.6■□□□□ 0.73
SPTA1P02549 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SPTA1P02549 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SPTA1P02549 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SPTA1P02549 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SPTA1P02549 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.6■□□□□ 0.73
SPTA1P02549 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.6■□□□□ 0.73
SPTA1P02549 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.6■□□□□ 0.73
SPTA1P02549 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SPTA1P02549 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.59■□□□□ 0.73
SPTA1P02549 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SPTA1P02549 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC19.59■□□□□ 0.73
SPTA1P02549 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SPTA1P02549 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SPTA1P02549 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SPTA1P02549 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SPTA1P02549 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SPTA1P02549 AC091874.3-201ENST00000512672 1195 ntBASIC19.59■□□□□ 0.73
SPTA1P02549 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
SPTA1P02549 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SPTA1P02549 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms