Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SDC3O75056 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SDC3O75056 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SDC3O75056 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SDC3O75056 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SDC3O75056 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SDC3O75056 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SDC3O75056 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.12■□□□□ 0.97
SDC3O75056 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.12■□□□□ 0.97
SDC3O75056 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SDC3O75056 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SDC3O75056 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.12■□□□□ 0.97
SDC3O75056 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SDC3O75056 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
SDC3O75056 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SDC3O75056 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SDC3O75056 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SDC3O75056 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.11■□□□□ 0.97
SDC3O75056 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SDC3O75056 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SDC3O75056 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SDC3O75056 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.11■□□□□ 0.97
SDC3O75056 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SDC3O75056 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SDC3O75056 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
SDC3O75056 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SDC3O75056 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SDC3O75056 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SDC3O75056 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.1■□□□□ 0.97
SDC3O75056 AC079089.2-201ENST00000531211 1277 ntBASIC21.1■□□□□ 0.97
SDC3O75056 AP001160.3-201ENST00000601484 763 ntBASIC21.1■□□□□ 0.97
SDC3O75056 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.1■□□□□ 0.97
SDC3O75056 AL050303.2-201ENST00000619798 666 ntBASIC21.1■□□□□ 0.97
SDC3O75056 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.1■□□□□ 0.97
SDC3O75056 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SDC3O75056 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.1■□□□□ 0.97
SDC3O75056 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SDC3O75056 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SDC3O75056 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
SDC3O75056 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SDC3O75056 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.09■□□□□ 0.97
SDC3O75056 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.09■□□□□ 0.97
SDC3O75056 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SDC3O75056 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.09■□□□□ 0.97
SDC3O75056 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SDC3O75056 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SDC3O75056 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SDC3O75056 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.09■□□□□ 0.97
SDC3O75056 AP004607.7-201ENST00000527152 1677 ntBASIC21.09■□□□□ 0.97
SDC3O75056 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SDC3O75056 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SDC3O75056 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
SDC3O75056 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SDC3O75056 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SDC3O75056 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SDC3O75056 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.08■□□□□ 0.97
SDC3O75056 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.08■□□□□ 0.97
SDC3O75056 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SDC3O75056 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SDC3O75056 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.97
SDC3O75056 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.08■□□□□ 0.97
SDC3O75056 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
SDC3O75056 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.08■□□□□ 0.97
SDC3O75056 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SDC3O75056 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.08■□□□□ 0.97
SDC3O75056 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SDC3O75056 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.08■□□□□ 0.96
SDC3O75056 AC055733.4-201ENST00000638462 1354 ntBASIC21.08■□□□□ 0.96
SDC3O75056 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SDC3O75056 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SDC3O75056 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SDC3O75056 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SDC3O75056 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SDC3O75056 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.07■□□□□ 0.96
SDC3O75056 DUX4L16-201ENST00000555130 1264 ntBASIC21.07■□□□□ 0.96
SDC3O75056 MYCNOS-205ENST00000641950 531 ntBASIC21.07■□□□□ 0.96
SDC3O75056 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.07■□□□□ 0.96
SDC3O75056 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.07■□□□□ 0.96
SDC3O75056 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SDC3O75056 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SDC3O75056 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
SDC3O75056 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SDC3O75056 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SDC3O75056 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SDC3O75056 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SDC3O75056 AC007322.1-201ENST00000426983 750 ntBASIC21.06■□□□□ 0.96
SDC3O75056 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.06■□□□□ 0.96
SDC3O75056 AC005181.1-201ENST00000604782 1256 ntBASIC21.06■□□□□ 0.96
SDC3O75056 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SDC3O75056 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SDC3O75056 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SDC3O75056 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SDC3O75056 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SDC3O75056 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SDC3O75056 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
SDC3O75056 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.05■□□□□ 0.96
SDC3O75056 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SDC3O75056 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SDC3O75056 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.05■□□□□ 0.96
SDC3O75056 AC083906.2-201ENST00000511578 360 ntBASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms