Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHOX2O60902 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.06
SHOX2O60902 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SHOX2O60902 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SHOX2O60902 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SHOX2O60902 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.64■■□□□ 1.06
SHOX2O60902 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SHOX2O60902 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
SHOX2O60902 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.06
SHOX2O60902 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.64■■□□□ 1.05
SHOX2O60902 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHOX2O60902 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SHOX2O60902 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.64■■□□□ 1.05
SHOX2O60902 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
SHOX2O60902 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.64■■□□□ 1.05
SHOX2O60902 AC007029.1-201ENST00000604183 313 ntBASIC21.64■■□□□ 1.05
SHOX2O60902 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHOX2O60902 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHOX2O60902 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
SHOX2O60902 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SHOX2O60902 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHOX2O60902 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
SHOX2O60902 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SHOX2O60902 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHOX2O60902 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SHOX2O60902 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHOX2O60902 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHOX2O60902 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHOX2O60902 RPS2P7-201ENST00000447334 885 ntBASIC21.63■■□□□ 1.05
SHOX2O60902 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SHOX2O60902 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.63■■□□□ 1.05
SHOX2O60902 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHOX2O60902 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHOX2O60902 AC073314.1-201ENST00000568729 2216 ntBASIC21.63■■□□□ 1.05
SHOX2O60902 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
SHOX2O60902 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.62■■□□□ 1.05
SHOX2O60902 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHOX2O60902 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
SHOX2O60902 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHOX2O60902 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHOX2O60902 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.62■■□□□ 1.05
SHOX2O60902 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHOX2O60902 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.62■■□□□ 1.05
SHOX2O60902 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
SHOX2O60902 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHOX2O60902 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHOX2O60902 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.62■■□□□ 1.05
SHOX2O60902 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.62■■□□□ 1.05
SHOX2O60902 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHOX2O60902 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.62■■□□□ 1.05
SHOX2O60902 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SHOX2O60902 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.61■■□□□ 1.05
SHOX2O60902 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.61■■□□□ 1.05
SHOX2O60902 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.61■■□□□ 1.05
SHOX2O60902 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.61■■□□□ 1.05
SHOX2O60902 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SHOX2O60902 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHOX2O60902 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHOX2O60902 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHOX2O60902 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SHOX2O60902 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHOX2O60902 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.6■■□□□ 1.05
SHOX2O60902 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHOX2O60902 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SHOX2O60902 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHOX2O60902 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHOX2O60902 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHOX2O60902 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.6■■□□□ 1.05
SHOX2O60902 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHOX2O60902 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHOX2O60902 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHOX2O60902 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHOX2O60902 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHOX2O60902 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHOX2O60902 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHOX2O60902 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.59■■□□□ 1.05
SHOX2O60902 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SHOX2O60902 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.59■■□□□ 1.05
SHOX2O60902 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.59■■□□□ 1.05
SHOX2O60902 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHOX2O60902 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.59■■□□□ 1.05
SHOX2O60902 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.59■■□□□ 1.05
SHOX2O60902 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHOX2O60902 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SHOX2O60902 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.58■■□□□ 1.05
SHOX2O60902 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHOX2O60902 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHOX2O60902 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.58■■□□□ 1.05
SHOX2O60902 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHOX2O60902 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.58■■□□□ 1.05
SHOX2O60902 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.58■■□□□ 1.05
SHOX2O60902 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.58■■□□□ 1.04
SHOX2O60902 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHOX2O60902 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SHOX2O60902 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHOX2O60902 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
SHOX2O60902 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHOX2O60902 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.04
SHOX2O60902 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHOX2O60902 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms