Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC28.8■■■□□ 2.2
MSH5O43196 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
MSH5O43196 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC28.8■■■□□ 2.2
MSH5O43196 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC28.8■■■□□ 2.2
MSH5O43196 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC28.8■■■□□ 2.2
MSH5O43196 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC28.8■■■□□ 2.2
MSH5O43196 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC28.8■■■□□ 2.2
MSH5O43196 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC28.8■■■□□ 2.2
MSH5O43196 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC28.8■■■□□ 2.2
MSH5O43196 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC28.8■■■□□ 2.2
MSH5O43196 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC28.8■■■□□ 2.2
MSH5O43196 RNF165-205ENST00000588679 2904 ntBASIC28.8■■■□□ 2.2
MSH5O43196 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC28.8■■■□□ 2.2
MSH5O43196 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC28.8■■■□□ 2.2
MSH5O43196 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC28.8■■■□□ 2.2
MSH5O43196 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
MSH5O43196 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
MSH5O43196 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
MSH5O43196 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC28.79■■■□□ 2.2
MSH5O43196 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC28.79■■■□□ 2.2
MSH5O43196 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
MSH5O43196 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC28.79■■■□□ 2.2
MSH5O43196 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
MSH5O43196 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC28.79■■■□□ 2.2
MSH5O43196 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC28.79■■■□□ 2.2
MSH5O43196 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC28.79■■■□□ 2.2
MSH5O43196 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC28.79■■■□□ 2.2
MSH5O43196 EMC9-206ENST00000560403 872 ntTSL 2 BASIC28.79■■■□□ 2.2
MSH5O43196 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC28.79■■■□□ 2.2
MSH5O43196 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
MSH5O43196 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC28.79■■■□□ 2.2
MSH5O43196 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
MSH5O43196 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC28.78■■■□□ 2.2
MSH5O43196 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
MSH5O43196 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC28.78■■■□□ 2.2
MSH5O43196 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
MSH5O43196 AC137761.2-201ENST00000561729 223 ntBASIC28.78■■■□□ 2.2
MSH5O43196 AC145350.3-201ENST00000569033 163 ntBASIC28.78■■■□□ 2.2
MSH5O43196 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC28.78■■■□□ 2.2
MSH5O43196 AC009452.1-201ENST00000640823 606 ntBASIC28.78■■■□□ 2.2
MSH5O43196 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
MSH5O43196 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
MSH5O43196 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
MSH5O43196 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC28.78■■■□□ 2.2
MSH5O43196 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
MSH5O43196 DUSP8P3-201ENST00000399571 1760 ntBASIC28.78■■■□□ 2.2
MSH5O43196 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
MSH5O43196 CDCA4P2-201ENST00000441182 718 ntBASIC28.77■■■□□ 2.2
MSH5O43196 AC073111.5-205ENST00000641717 521 ntBASIC28.77■■■□□ 2.2
MSH5O43196 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
MSH5O43196 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
MSH5O43196 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC28.77■■■□□ 2.2
MSH5O43196 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC28.77■■■□□ 2.2
MSH5O43196 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC28.77■■■□□ 2.2
MSH5O43196 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
MSH5O43196 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.19
MSH5O43196 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.19
MSH5O43196 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
MSH5O43196 AL355802.2-201ENST00000402069 882 ntBASIC28.76■■■□□ 2.19
MSH5O43196 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC28.76■■■□□ 2.19
MSH5O43196 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC28.76■■■□□ 2.19
MSH5O43196 AC005954.1-201ENST00000591962 337 ntTSL 3 BASIC28.76■■■□□ 2.19
MSH5O43196 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
MSH5O43196 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
MSH5O43196 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
MSH5O43196 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
MSH5O43196 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
MSH5O43196 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
MSH5O43196 AC104771.1-201ENST00000603335 964 ntBASIC28.75■■■□□ 2.19
MSH5O43196 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
MSH5O43196 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
MSH5O43196 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC28.75■■■□□ 2.19
MSH5O43196 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC28.75■■■□□ 2.19
MSH5O43196 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC28.75■■■□□ 2.19
MSH5O43196 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
MSH5O43196 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC28.75■■■□□ 2.19
MSH5O43196 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
MSH5O43196 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC28.74■■■□□ 2.19
MSH5O43196 AL079304.1-201ENST00000554595 828 ntTSL 2 BASIC28.74■■■□□ 2.19
MSH5O43196 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC28.74■■■□□ 2.19
MSH5O43196 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC28.74■■■□□ 2.19
MSH5O43196 RAP2CP1-201ENST00000605103 478 ntBASIC28.74■■■□□ 2.19
MSH5O43196 TMEM191A-211ENST00000637163 1067 ntBASIC28.74■■■□□ 2.19
MSH5O43196 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
MSH5O43196 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
MSH5O43196 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC28.74■■■□□ 2.19
MSH5O43196 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
MSH5O43196 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
MSH5O43196 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC28.73■■■□□ 2.19
MSH5O43196 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC28.73■■■□□ 2.19
MSH5O43196 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC28.72■■■□□ 2.19
MSH5O43196 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC28.72■■■□□ 2.19
MSH5O43196 HIKESHI-201ENST00000278483 1113 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
MSH5O43196 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC28.72■■■□□ 2.19
MSH5O43196 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC28.72■■■□□ 2.19
MSH5O43196 LHPP-203ENST00000392757 840 ntTSL 3 BASIC28.72■■■□□ 2.19
MSH5O43196 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
MSH5O43196 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC28.72■■■□□ 2.19
MSH5O43196 AC006015.1-201ENST00000429970 570 ntBASIC28.72■■■□□ 2.19
MSH5O43196 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC28.72■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms