Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGN4O00479 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGN4O00479 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGN4O00479 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
HMGN4O00479 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGN4O00479 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGN4O00479 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGN4O00479 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
HMGN4O00479 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGN4O00479 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
HMGN4O00479 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGN4O00479 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGN4O00479 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGN4O00479 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
HMGN4O00479 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.06■□□□□ 0.8
HMGN4O00479 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGN4O00479 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGN4O00479 SLC47A1P1-202ENST00000449666 945 ntBASIC20.06■□□□□ 0.8
HMGN4O00479 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.06■□□□□ 0.8
HMGN4O00479 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.06■□□□□ 0.8
HMGN4O00479 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.06■□□□□ 0.8
HMGN4O00479 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGN4O00479 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGN4O00479 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGN4O00479 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGN4O00479 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGN4O00479 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGN4O00479 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
HMGN4O00479 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGN4O00479 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HMGN4O00479 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGN4O00479 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGN4O00479 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGN4O00479 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGN4O00479 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.05■□□□□ 0.8
HMGN4O00479 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.05■□□□□ 0.8
HMGN4O00479 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
HMGN4O00479 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HMGN4O00479 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGN4O00479 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HMGN4O00479 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HMGN4O00479 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
HMGN4O00479 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
HMGN4O00479 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGN4O00479 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGN4O00479 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGN4O00479 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
HMGN4O00479 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGN4O00479 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.04■□□□□ 0.8
HMGN4O00479 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.04■□□□□ 0.8
HMGN4O00479 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.04■□□□□ 0.8
HMGN4O00479 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
HMGN4O00479 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.04■□□□□ 0.8
HMGN4O00479 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
HMGN4O00479 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGN4O00479 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGN4O00479 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.03■□□□□ 0.8
HMGN4O00479 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGN4O00479 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.03■□□□□ 0.8
HMGN4O00479 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGN4O00479 AL136116.3-201ENST00000402907 1138 ntBASIC20.03■□□□□ 0.8
HMGN4O00479 AP005435.1-201ENST00000529293 1178 ntBASIC20.03■□□□□ 0.8
HMGN4O00479 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGN4O00479 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.03■□□□□ 0.8
HMGN4O00479 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.03■□□□□ 0.8
HMGN4O00479 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGN4O00479 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGN4O00479 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGN4O00479 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGN4O00479 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGN4O00479 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGN4O00479 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGN4O00479 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.02■□□□□ 0.8
HMGN4O00479 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGN4O00479 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGN4O00479 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.02■□□□□ 0.8
HMGN4O00479 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.02■□□□□ 0.8
HMGN4O00479 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.02■□□□□ 0.8
HMGN4O00479 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HMGN4O00479 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
HMGN4O00479 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.02■□□□□ 0.8
HMGN4O00479 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGN4O00479 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGN4O00479 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.02■□□□□ 0.79
HMGN4O00479 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.02■□□□□ 0.79
HMGN4O00479 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
HMGN4O00479 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGN4O00479 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.01■□□□□ 0.79
HMGN4O00479 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGN4O00479 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGN4O00479 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGN4O00479 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.01■□□□□ 0.79
HMGN4O00479 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGN4O00479 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGN4O00479 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.01■□□□□ 0.79
HMGN4O00479 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HMGN4O00479 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
HMGN4O00479 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
HMGN4O00479 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HMGN4O00479 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms