Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC16.86■□□□□ 0.29
TRAV1-1A0A0B4J248 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 TPT1-202ENST00000379055 948 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 AC104564.3-201ENST00000582367 638 ntBASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 AC018755.3-202ENST00000596210 929 ntBASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC16.85■□□□□ 0.29
TRAV1-1A0A0B4J248 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 IDNK-203ENST00000405990 629 ntTSL 2 BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 AC022413.1-201ENST00000624602 984 ntBASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 GAK-223ENST00000628912 497 ntTSL 5 BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAV1-1A0A0B4J248 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRAV1-1A0A0B4J248 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRAV1-1A0A0B4J248 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRAV1-1A0A0B4J248 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 AC009831.1-201ENST00000580420 1582 ntBASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 LONRF2P2-201ENST00000439212 571 ntBASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 AC016575.1-201ENST00000607026 382 ntBASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 AL049796.1-201ENST00000565336 1766 ntBASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.82■□□□□ 0.28
TRAV1-1A0A0B4J248 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.81■□□□□ 0.28
TRAV1-1A0A0B4J248 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms