Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 AC034268.1-201ENST00000441047 882 ntBASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC28.99■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 CLDN5-201ENST00000403084 2357 ntBASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 FBXW4P1-201ENST00000426721 2239 ntBASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 STX4-202ENST00000394998 1498 ntTSL 2 BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC28.98■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC28.97■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC28.97■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 KRT18P5-201ENST00000436075 1291 ntBASIC28.97■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 MIR4767-201ENST00000582827 78 ntBASIC28.97■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC28.96■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC28.96■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC28.96■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC28.96■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC28.95■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 AL137060.1-201ENST00000618151 2648 ntBASIC28.95■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC28.95■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
SENP3-EIF4A1A0A087X0R7 PTMA-205ENST00000410064 814 ntTSL 2 BASIC28.95■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC28.95■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC28.95■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 ARL16-209ENST00000573715 763 ntTSL 3 BASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 ARL16-211ENST00000576135 694 ntTSL 3 BASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 AC026471.6-201ENST00000622954 1905 ntBASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC28.94■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC28.93■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC28.93■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC28.93■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC28.93■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC28.93■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC28.93■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC28.93■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC28.93■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC28.93■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC28.92■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC28.92■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC28.92■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC28.92■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC28.92■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 EFS-203ENST00000429593 2610 ntTSL 2 BASIC28.91■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC28.91■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 JTB-203ENST00000368589 1216 ntTSL 2 BASIC28.91■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC28.91■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC28.91■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC28.91■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC28.91■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC28.91■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
SENP3-EIF4A1A0A087X0R7 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC28.9■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms