Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 AC005224.4-201ENST00000583262 1652 ntBASIC19.65■□□□□ 0.74
SHANK1Q9Y566 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHANK1Q9Y566 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.64■□□□□ 0.74
SHANK1Q9Y566 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.64■□□□□ 0.74
SHANK1Q9Y566 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.64■□□□□ 0.74
SHANK1Q9Y566 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.64■□□□□ 0.74
SHANK1Q9Y566 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SHANK1Q9Y566 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.64■□□□□ 0.73
SHANK1Q9Y566 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHANK1Q9Y566 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHANK1Q9Y566 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.64■□□□□ 0.73
SHANK1Q9Y566 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.64■□□□□ 0.73
SHANK1Q9Y566 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SHANK1Q9Y566 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 AC007322.1-201ENST00000426983 750 ntBASIC19.63■□□□□ 0.73
SHANK1Q9Y566 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.63■□□□□ 0.73
SHANK1Q9Y566 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SHANK1Q9Y566 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.62■□□□□ 0.73
SHANK1Q9Y566 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.62■□□□□ 0.73
SHANK1Q9Y566 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
SHANK1Q9Y566 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.62■□□□□ 0.73
SHANK1Q9Y566 AC005181.1-201ENST00000604782 1256 ntBASIC19.62■□□□□ 0.73
SHANK1Q9Y566 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.62■□□□□ 0.73
SHANK1Q9Y566 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SHANK1Q9Y566 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHANK1Q9Y566 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SHANK1Q9Y566 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK1Q9Y566 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK1Q9Y566 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SHANK1Q9Y566 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SHANK1Q9Y566 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SHANK1Q9Y566 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK1Q9Y566 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.6■□□□□ 0.73
SHANK1Q9Y566 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHANK1Q9Y566 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.6■□□□□ 0.73
SHANK1Q9Y566 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SHANK1Q9Y566 AC004812.2-201ENST00000611079 2094 ntBASIC19.59■□□□□ 0.73
SHANK1Q9Y566 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK1Q9Y566 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.59■□□□□ 0.73
SHANK1Q9Y566 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.59■□□□□ 0.73
SHANK1Q9Y566 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.59■□□□□ 0.73
SHANK1Q9Y566 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.59■□□□□ 0.73
SHANK1Q9Y566 ITM2C-210ENST00000620962 501 ntBASIC19.59■□□□□ 0.73
SHANK1Q9Y566 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK1Q9Y566 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK1Q9Y566 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.59■□□□□ 0.73
SHANK1Q9Y566 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK1Q9Y566 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK1Q9Y566 AC010141.3-201ENST00000456659 717 ntBASIC19.59■□□□□ 0.73
SHANK1Q9Y566 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SHANK1Q9Y566 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHANK1Q9Y566 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SHANK1Q9Y566 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SHANK1Q9Y566 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SHANK1Q9Y566 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
SHANK1Q9Y566 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SHANK1Q9Y566 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SHANK1Q9Y566 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SHANK1Q9Y566 POU5F1P3-201ENST00000428824 1078 ntBASIC19.58■□□□□ 0.72
SHANK1Q9Y566 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
SHANK1Q9Y566 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
SHANK1Q9Y566 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHANK1Q9Y566 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.72
SHANK1Q9Y566 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK1Q9Y566 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SHANK1Q9Y566 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.57■□□□□ 0.72
SHANK1Q9Y566 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.57■□□□□ 0.72
SHANK1Q9Y566 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHANK1Q9Y566 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms