Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS4AQ9UN37 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS4AQ9UN37 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
VPS4AQ9UN37 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
VPS4AQ9UN37 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.8■□□□□ 0.92
VPS4AQ9UN37 AC099791.2-201ENST00000605725 427 ntBASIC20.8■□□□□ 0.92
VPS4AQ9UN37 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS4AQ9UN37 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS4AQ9UN37 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS4AQ9UN37 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS4AQ9UN37 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.8■□□□□ 0.92
VPS4AQ9UN37 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS4AQ9UN37 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS4AQ9UN37 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
VPS4AQ9UN37 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
VPS4AQ9UN37 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS4AQ9UN37 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS4AQ9UN37 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS4AQ9UN37 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.79■□□□□ 0.92
VPS4AQ9UN37 AC022517.1-201ENST00000592429 346 ntBASIC20.79■□□□□ 0.92
VPS4AQ9UN37 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS4AQ9UN37 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS4AQ9UN37 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
VPS4AQ9UN37 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4AQ9UN37 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
VPS4AQ9UN37 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS4AQ9UN37 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
VPS4AQ9UN37 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS4AQ9UN37 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS4AQ9UN37 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.78■□□□□ 0.92
VPS4AQ9UN37 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.78■□□□□ 0.92
VPS4AQ9UN37 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.78■□□□□ 0.92
VPS4AQ9UN37 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4AQ9UN37 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4AQ9UN37 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS4AQ9UN37 C11orf96-202ENST00000528572 1834 ntBASIC20.78■□□□□ 0.92
VPS4AQ9UN37 AC009102.2-201ENST00000606772 1639 ntBASIC20.78■□□□□ 0.92
VPS4AQ9UN37 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
VPS4AQ9UN37 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS4AQ9UN37 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VPS4AQ9UN37 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
VPS4AQ9UN37 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS4AQ9UN37 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.77■□□□□ 0.92
VPS4AQ9UN37 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.77■□□□□ 0.92
VPS4AQ9UN37 IKBKGP1-201ENST00000612193 1073 ntBASIC20.77■□□□□ 0.92
VPS4AQ9UN37 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.77■□□□□ 0.92
VPS4AQ9UN37 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS4AQ9UN37 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
VPS4AQ9UN37 LINC01960-201ENST00000563759 1884 ntBASIC20.77■□□□□ 0.92
VPS4AQ9UN37 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
VPS4AQ9UN37 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.77■□□□□ 0.91
VPS4AQ9UN37 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VPS4AQ9UN37 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.75■□□□□ 0.91
VPS4AQ9UN37 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 AC007375.3-201ENST00000600936 2314 ntBASIC20.75■□□□□ 0.91
VPS4AQ9UN37 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS4AQ9UN37 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 SLC47A1P1-202ENST00000449666 945 ntBASIC20.74■□□□□ 0.91
VPS4AQ9UN37 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS4AQ9UN37 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms