Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MKS1Q9NXB0 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MKS1Q9NXB0 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MKS1Q9NXB0 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MKS1Q9NXB0 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
MKS1Q9NXB0 AC104564.3-201ENST00000582367 638 ntBASIC21.37■■□□□ 1.01
MKS1Q9NXB0 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MKS1Q9NXB0 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.37■■□□□ 1.01
MKS1Q9NXB0 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.37■■□□□ 1.01
MKS1Q9NXB0 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MKS1Q9NXB0 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
MKS1Q9NXB0 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
MKS1Q9NXB0 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.37■■□□□ 1.01
MKS1Q9NXB0 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MKS1Q9NXB0 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MKS1Q9NXB0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 Z92544.1-202ENST00000571933 1220 ntBASIC21.35■■□□□ 1.01
MKS1Q9NXB0 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MKS1Q9NXB0 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.34■■□□□ 1.01
MKS1Q9NXB0 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.34■■□□□ 1.01
MKS1Q9NXB0 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
MKS1Q9NXB0 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MKS1Q9NXB0 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MKS1Q9NXB0 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MKS1Q9NXB0 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
MKS1Q9NXB0 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.34■■□□□ 1.01
MKS1Q9NXB0 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.34■■□□□ 1.01
MKS1Q9NXB0 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MKS1Q9NXB0 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MKS1Q9NXB0 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
MKS1Q9NXB0 LINC01521-201ENST00000504184 1943 ntBASIC21.33■■□□□ 1
MKS1Q9NXB0 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MKS1Q9NXB0 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
MKS1Q9NXB0 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MKS1Q9NXB0 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.33■■□□□ 1
MKS1Q9NXB0 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
MKS1Q9NXB0 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MKS1Q9NXB0 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
MKS1Q9NXB0 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.32■■□□□ 1
MKS1Q9NXB0 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.32■■□□□ 1
MKS1Q9NXB0 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MKS1Q9NXB0 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.32■■□□□ 1
MKS1Q9NXB0 OR7E47P-201ENST00000546390 1422 ntBASIC21.32■■□□□ 1
MKS1Q9NXB0 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
MKS1Q9NXB0 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.32■■□□□ 1
MKS1Q9NXB0 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
MKS1Q9NXB0 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.32■■□□□ 1
MKS1Q9NXB0 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MKS1Q9NXB0 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
MKS1Q9NXB0 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.31■■□□□ 1
MKS1Q9NXB0 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.31■■□□□ 1
MKS1Q9NXB0 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MKS1Q9NXB0 OXCT2P1-201ENST00000447263 1535 ntBASIC21.31■■□□□ 1
MKS1Q9NXB0 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MKS1Q9NXB0 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
MKS1Q9NXB0 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.31■■□□□ 1
MKS1Q9NXB0 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
MKS1Q9NXB0 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms