Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM39Q9HCM9 BX005040.4-201ENST00000637145 1518 ntBASIC21.39■■□□□ 1.02
TRIM39Q9HCM9 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.39■■□□□ 1.02
TRIM39Q9HCM9 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
TRIM39Q9HCM9 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
TRIM39Q9HCM9 AC012676.1-201ENST00000574705 1949 ntBASIC21.39■■□□□ 1.02
TRIM39Q9HCM9 LINC00526-201ENST00000581067 1875 ntBASIC21.39■■□□□ 1.02
TRIM39Q9HCM9 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
TRIM39Q9HCM9 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
TRIM39Q9HCM9 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
TRIM39Q9HCM9 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM39Q9HCM9 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM39Q9HCM9 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM39Q9HCM9 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM39Q9HCM9 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM39Q9HCM9 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM39Q9HCM9 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM39Q9HCM9 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
TRIM39Q9HCM9 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM39Q9HCM9 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.38■■□□□ 1.01
TRIM39Q9HCM9 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM39Q9HCM9 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
TRIM39Q9HCM9 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.38■■□□□ 1.01
TRIM39Q9HCM9 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM39Q9HCM9 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
TRIM39Q9HCM9 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.38■■□□□ 1.01
TRIM39Q9HCM9 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM39Q9HCM9 OR7E47P-201ENST00000546390 1422 ntBASIC21.38■■□□□ 1.01
TRIM39Q9HCM9 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM39Q9HCM9 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM39Q9HCM9 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM39Q9HCM9 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM39Q9HCM9 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.37■■□□□ 1.01
TRIM39Q9HCM9 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
TRIM39Q9HCM9 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.37■■□□□ 1.01
TRIM39Q9HCM9 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.37■■□□□ 1.01
TRIM39Q9HCM9 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.37■■□□□ 1.01
TRIM39Q9HCM9 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM39Q9HCM9 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
TRIM39Q9HCM9 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM39Q9HCM9 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM39Q9HCM9 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 AC127496.7-201ENST00000625110 1798 ntBASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 CLDN5-201ENST00000403084 2357 ntBASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM39Q9HCM9 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM39Q9HCM9 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.35■■□□□ 1.01
TRIM39Q9HCM9 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.35■■□□□ 1.01
TRIM39Q9HCM9 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM39Q9HCM9 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM39Q9HCM9 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.35■■□□□ 1.01
TRIM39Q9HCM9 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.35■■□□□ 1.01
TRIM39Q9HCM9 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.35■■□□□ 1.01
TRIM39Q9HCM9 AC139530.1-201ENST00000575312 1977 ntBASIC21.35■■□□□ 1.01
TRIM39Q9HCM9 LINC02228-203ENST00000641970 1355 ntBASIC21.35■■□□□ 1.01
TRIM39Q9HCM9 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM39Q9HCM9 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.35■■□□□ 1.01
TRIM39Q9HCM9 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 AC087623.3-201ENST00000607047 1098 ntBASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM39Q9HCM9 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 TPRG1LP1-201ENST00000598702 760 ntBASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 MIR5787-201ENST00000611784 55 ntBASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM39Q9HCM9 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms