Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDH9Q9HC56 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDH9Q9HC56 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDH9Q9HC56 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
PCDH9Q9HC56 AC011298.3-201ENST00000615796 283 ntBASIC22.32■■□□□ 1.16
PCDH9Q9HC56 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDH9Q9HC56 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PCDH9Q9HC56 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PCDH9Q9HC56 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 AL136162.1-201ENST00000607711 1078 ntBASIC22.31■■□□□ 1.16
PCDH9Q9HC56 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PCDH9Q9HC56 AC026310.3-201ENST00000625186 2373 ntBASIC22.31■■□□□ 1.16
PCDH9Q9HC56 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDH9Q9HC56 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
PCDH9Q9HC56 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDH9Q9HC56 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PCDH9Q9HC56 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC22.3■■□□□ 1.16
PCDH9Q9HC56 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDH9Q9HC56 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
PCDH9Q9HC56 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC22.3■■□□□ 1.16
PCDH9Q9HC56 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PCDH9Q9HC56 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDH9Q9HC56 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDH9Q9HC56 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC22.3■■□□□ 1.16
PCDH9Q9HC56 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDH9Q9HC56 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDH9Q9HC56 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDH9Q9HC56 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC22.29■■□□□ 1.16
PCDH9Q9HC56 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDH9Q9HC56 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDH9Q9HC56 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDH9Q9HC56 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC22.29■■□□□ 1.16
PCDH9Q9HC56 AC136469.2-201ENST00000623944 1028 ntBASIC22.29■■□□□ 1.16
PCDH9Q9HC56 AL031602.1-201ENST00000633169 911 ntBASIC22.29■■□□□ 1.16
PCDH9Q9HC56 GOLGA2P6-201ENST00000340929 2049 ntBASIC22.29■■□□□ 1.16
PCDH9Q9HC56 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PCDH9Q9HC56 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
PCDH9Q9HC56 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PCDH9Q9HC56 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDH9Q9HC56 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDH9Q9HC56 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PCDH9Q9HC56 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDH9Q9HC56 NALT1-201ENST00000429224 738 ntTSL 5 BASIC22.28■■□□□ 1.16
PCDH9Q9HC56 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.28■■□□□ 1.16
PCDH9Q9HC56 AC024257.2-201ENST00000549699 147 ntBASIC22.28■■□□□ 1.16
PCDH9Q9HC56 AC110285.6-201ENST00000617652 491 ntBASIC22.28■■□□□ 1.16
PCDH9Q9HC56 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
PCDH9Q9HC56 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC22.28■■□□□ 1.16
PCDH9Q9HC56 AC135279.3-201ENST00000610945 1311 ntBASIC22.28■■□□□ 1.16
PCDH9Q9HC56 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDH9Q9HC56 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDH9Q9HC56 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDH9Q9HC56 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDH9Q9HC56 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDH9Q9HC56 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC22.27■■□□□ 1.16
PCDH9Q9HC56 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
PCDH9Q9HC56 PTMA-205ENST00000410064 814 ntTSL 2 BASIC22.27■■□□□ 1.16
PCDH9Q9HC56 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.27■■□□□ 1.16
PCDH9Q9HC56 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
PCDH9Q9HC56 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.27■■□□□ 1.16
PCDH9Q9HC56 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC22.27■■□□□ 1.16
PCDH9Q9HC56 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDH9Q9HC56 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
PCDH9Q9HC56 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.27■■□□□ 1.15
PCDH9Q9HC56 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 AC244015.2-201ENST00000616358 1861 ntBASIC22.26■■□□□ 1.15
PCDH9Q9HC56 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 PBX2P1-201ENST00000493219 1291 ntBASIC22.26■■□□□ 1.15
PCDH9Q9HC56 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC22.26■■□□□ 1.15
PCDH9Q9HC56 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
PCDH9Q9HC56 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
PCDH9Q9HC56 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PCDH9Q9HC56 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms