Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC23.84■■□□□ 1.41
PEX3P56589 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PEX3P56589 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PEX3P56589 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC23.84■■□□□ 1.41
PEX3P56589 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PEX3P56589 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PEX3P56589 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
PEX3P56589 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PEX3P56589 GUSBP5-202ENST00000510805 1989 ntBASIC23.83■■□□□ 1.41
PEX3P56589 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
PEX3P56589 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PEX3P56589 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
PEX3P56589 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
PEX3P56589 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
PEX3P56589 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
PEX3P56589 AC026271.2-201ENST00000428091 497 ntBASIC23.83■■□□□ 1.41
PEX3P56589 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC23.83■■□□□ 1.41
PEX3P56589 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
PEX3P56589 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC23.83■■□□□ 1.41
PEX3P56589 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
PEX3P56589 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
PEX3P56589 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC23.83■■□□□ 1.41
PEX3P56589 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
PEX3P56589 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PEX3P56589 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC23.82■■□□□ 1.4
PEX3P56589 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PEX3P56589 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PEX3P56589 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC23.82■■□□□ 1.4
PEX3P56589 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
PEX3P56589 YBX1P1-201ENST00000445822 960 ntBASIC23.82■■□□□ 1.4
PEX3P56589 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
PEX3P56589 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PEX3P56589 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PEX3P56589 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
PEX3P56589 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
PEX3P56589 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PEX3P56589 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.81■■□□□ 1.4
PEX3P56589 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
PEX3P56589 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PEX3P56589 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
PEX3P56589 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
PEX3P56589 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC23.81■■□□□ 1.4
PEX3P56589 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC23.81■■□□□ 1.4
PEX3P56589 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
PEX3P56589 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PEX3P56589 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PEX3P56589 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
PEX3P56589 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PEX3P56589 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PEX3P56589 AP004607.7-201ENST00000527152 1677 ntBASIC23.8■■□□□ 1.4
PEX3P56589 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
PEX3P56589 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
PEX3P56589 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
PEX3P56589 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
PEX3P56589 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PEX3P56589 AC097381.1-201ENST00000429019 1296 ntBASIC23.8■■□□□ 1.4
PEX3P56589 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.8■■□□□ 1.4
PEX3P56589 MIR6821-201ENST00000617625 74 ntBASIC23.8■■□□□ 1.4
PEX3P56589 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC23.8■■□□□ 1.4
PEX3P56589 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC23.8■■□□□ 1.4
PEX3P56589 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC23.8■■□□□ 1.4
PEX3P56589 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PEX3P56589 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PEX3P56589 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PEX3P56589 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
PEX3P56589 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
PEX3P56589 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
PEX3P56589 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PEX3P56589 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
PEX3P56589 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC23.79■■□□□ 1.4
PEX3P56589 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PEX3P56589 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PEX3P56589 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
PEX3P56589 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC23.79■■□□□ 1.4
PEX3P56589 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PEX3P56589 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC23.79■■□□□ 1.4
PEX3P56589 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PEX3P56589 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.78■■□□□ 1.4
PEX3P56589 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
PEX3P56589 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PEX3P56589 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PEX3P56589 AC242852.2-201ENST00000615738 1807 ntBASIC23.78■■□□□ 1.4
PEX3P56589 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PEX3P56589 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PEX3P56589 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC23.78■■□□□ 1.4
PEX3P56589 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PEX3P56589 AC123595.1-201ENST00000440769 1046 ntBASIC23.78■■□□□ 1.4
PEX3P56589 TPRG1LP1-201ENST00000598702 760 ntBASIC23.78■■□□□ 1.4
PEX3P56589 AC087623.3-201ENST00000607047 1098 ntBASIC23.78■■□□□ 1.4
PEX3P56589 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PEX3P56589 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PEX3P56589 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC23.78■■□□□ 1.4
PEX3P56589 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PEX3P56589 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PEX3P56589 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PEX3P56589 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PEX3P56589 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PEX3P56589 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.77■■□□□ 1.4
PEX3P56589 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PEX3P56589 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms