Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HNF4AP41235 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HNF4AP41235 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HNF4AP41235 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HNF4AP41235 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HNF4AP41235 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HNF4AP41235 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HNF4AP41235 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HNF4AP41235 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HNF4AP41235 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HNF4AP41235 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
HNF4AP41235 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
HNF4AP41235 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HNF4AP41235 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HNF4AP41235 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HNF4AP41235 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HNF4AP41235 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HNF4AP41235 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HNF4AP41235 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.92■□□□□ 0.94
HNF4AP41235 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
HNF4AP41235 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HNF4AP41235 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.92■□□□□ 0.94
HNF4AP41235 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HNF4AP41235 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HNF4AP41235 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HNF4AP41235 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HNF4AP41235 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
HNF4AP41235 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HNF4AP41235 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HNF4AP41235 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HNF4AP41235 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
HNF4AP41235 AC010141.3-201ENST00000456659 717 ntBASIC20.91■□□□□ 0.94
HNF4AP41235 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
HNF4AP41235 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.91■□□□□ 0.94
HNF4AP41235 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.91■□□□□ 0.94
HNF4AP41235 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
HNF4AP41235 AC008764.7-201ENST00000593779 1081 ntBASIC20.91■□□□□ 0.94
HNF4AP41235 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.91■□□□□ 0.94
HNF4AP41235 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HNF4AP41235 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HNF4AP41235 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HNF4AP41235 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.9■□□□□ 0.94
HNF4AP41235 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HNF4AP41235 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HNF4AP41235 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HNF4AP41235 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
HNF4AP41235 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.9■□□□□ 0.94
HNF4AP41235 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.9■□□□□ 0.94
HNF4AP41235 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.9■□□□□ 0.94
HNF4AP41235 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.9■□□□□ 0.94
HNF4AP41235 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
HNF4AP41235 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HNF4AP41235 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.9■□□□□ 0.94
HNF4AP41235 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
HNF4AP41235 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HNF4AP41235 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HNF4AP41235 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
HNF4AP41235 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HNF4AP41235 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
HNF4AP41235 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HNF4AP41235 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HNF4AP41235 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.89■□□□□ 0.93
HNF4AP41235 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.89■□□□□ 0.93
HNF4AP41235 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.89■□□□□ 0.93
HNF4AP41235 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
HNF4AP41235 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
HNF4AP41235 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HNF4AP41235 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HNF4AP41235 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
HNF4AP41235 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
HNF4AP41235 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
HNF4AP41235 AP005435.1-201ENST00000529293 1178 ntBASIC20.88■□□□□ 0.93
HNF4AP41235 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.88■□□□□ 0.93
HNF4AP41235 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.88■□□□□ 0.93
HNF4AP41235 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.88■□□□□ 0.93
HNF4AP41235 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HNF4AP41235 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.88■□□□□ 0.93
HNF4AP41235 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
HNF4AP41235 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HNF4AP41235 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HNF4AP41235 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HNF4AP41235 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HNF4AP41235 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HNF4AP41235 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HNF4AP41235 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HNF4AP41235 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HNF4AP41235 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.87■□□□□ 0.93
HNF4AP41235 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
HNF4AP41235 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
HNF4AP41235 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HNF4AP41235 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.87■□□□□ 0.93
HNF4AP41235 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HNF4AP41235 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
HNF4AP41235 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.87■□□□□ 0.93
HNF4AP41235 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.87■□□□□ 0.93
HNF4AP41235 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HNF4AP41235 OR7E47P-201ENST00000546390 1422 ntBASIC20.87■□□□□ 0.93
HNF4AP41235 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HNF4AP41235 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.86■□□□□ 0.93
HNF4AP41235 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms