Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSX2P35548 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSX2P35548 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
MSX2P35548 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.58■□□□□ 0.89
MSX2P35548 AC004687.1-201ENST00000579003 1625 ntBASIC20.58■□□□□ 0.89
MSX2P35548 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSX2P35548 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.58■□□□□ 0.89
MSX2P35548 SNX5-217ENST00000606557 1087 ntBASIC20.58■□□□□ 0.89
MSX2P35548 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
MSX2P35548 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSX2P35548 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSX2P35548 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
MSX2P35548 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
MSX2P35548 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSX2P35548 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSX2P35548 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSX2P35548 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSX2P35548 BHLHE23-202ENST00000612929 1109 ntBASIC20.57■□□□□ 0.88
MSX2P35548 FP325331.1-202ENST00000623531 1380 ntBASIC20.57■□□□□ 0.88
MSX2P35548 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
MSX2P35548 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSX2P35548 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSX2P35548 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
MSX2P35548 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.56■□□□□ 0.88
MSX2P35548 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSX2P35548 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.56■□□□□ 0.88
MSX2P35548 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.56■□□□□ 0.88
MSX2P35548 LINC01521-201ENST00000504184 1943 ntBASIC20.56■□□□□ 0.88
MSX2P35548 LINC01006-201ENST00000333319 2292 ntBASIC20.56■□□□□ 0.88
MSX2P35548 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSX2P35548 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSX2P35548 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSX2P35548 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSX2P35548 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.55■□□□□ 0.88
MSX2P35548 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MSX2P35548 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSX2P35548 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.55■□□□□ 0.88
MSX2P35548 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSX2P35548 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.55■□□□□ 0.88
MSX2P35548 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSX2P35548 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSX2P35548 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.55■□□□□ 0.88
MSX2P35548 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.55■□□□□ 0.88
MSX2P35548 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
MSX2P35548 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSX2P35548 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
MSX2P35548 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSX2P35548 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
MSX2P35548 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.55■□□□□ 0.88
MSX2P35548 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
MSX2P35548 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.54■□□□□ 0.88
MSX2P35548 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.54■□□□□ 0.88
MSX2P35548 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.54■□□□□ 0.88
MSX2P35548 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.54■□□□□ 0.88
MSX2P35548 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 CA15P2-201ENST00000611168 834 ntBASIC20.54■□□□□ 0.88
MSX2P35548 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.54■□□□□ 0.88
MSX2P35548 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
MSX2P35548 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 AC026471.6-201ENST00000622954 1905 ntBASIC20.54■□□□□ 0.88
MSX2P35548 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSX2P35548 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.54■□□□□ 0.88
MSX2P35548 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSX2P35548 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.53■□□□□ 0.88
MSX2P35548 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.53■□□□□ 0.88
MSX2P35548 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
MSX2P35548 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.53■□□□□ 0.88
MSX2P35548 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.53■□□□□ 0.88
MSX2P35548 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.53■□□□□ 0.88
MSX2P35548 AC009086.3-201ENST00000623486 1008 ntBASIC20.53■□□□□ 0.88
MSX2P35548 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSX2P35548 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.53■□□□□ 0.88
MSX2P35548 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSX2P35548 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSX2P35548 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSX2P35548 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
MSX2P35548 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
MSX2P35548 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSX2P35548 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSX2P35548 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
MSX2P35548 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
MSX2P35548 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSX2P35548 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.52■□□□□ 0.88
MSX2P35548 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
MSX2P35548 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSX2P35548 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSX2P35548 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms