Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC4P09017 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.21■□□□□ 0.99
HOXC4P09017 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.21■□□□□ 0.99
HOXC4P09017 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC4P09017 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
HOXC4P09017 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HOXC4P09017 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.2■□□□□ 0.99
HOXC4P09017 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC4P09017 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.2■□□□□ 0.98
HOXC4P09017 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.2■□□□□ 0.98
HOXC4P09017 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
HOXC4P09017 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
HOXC4P09017 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.2■□□□□ 0.98
HOXC4P09017 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.2■□□□□ 0.98
HOXC4P09017 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.2■□□□□ 0.98
HOXC4P09017 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.2■□□□□ 0.98
HOXC4P09017 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
HOXC4P09017 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.2■□□□□ 0.98
HOXC4P09017 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.2■□□□□ 0.98
HOXC4P09017 RARRES2P11-201ENST00000635158 484 ntBASIC21.2■□□□□ 0.98
HOXC4P09017 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
HOXC4P09017 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.2■□□□□ 0.98
HOXC4P09017 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC4P09017 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC4P09017 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC4P09017 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HOXC4P09017 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC4P09017 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC4P09017 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC4P09017 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.19■□□□□ 0.98
HOXC4P09017 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC4P09017 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
HOXC4P09017 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HOXC4P09017 AC004911.1-201ENST00000416316 871 ntBASIC21.19■□□□□ 0.98
HOXC4P09017 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.19■□□□□ 0.98
HOXC4P09017 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.19■□□□□ 0.98
HOXC4P09017 AC137761.2-201ENST00000561729 223 ntBASIC21.19■□□□□ 0.98
HOXC4P09017 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.19■□□□□ 0.98
HOXC4P09017 AC145350.3-201ENST00000569033 163 ntBASIC21.19■□□□□ 0.98
HOXC4P09017 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.19■□□□□ 0.98
HOXC4P09017 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
HOXC4P09017 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC4P09017 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.18■□□□□ 0.98
HOXC4P09017 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
HOXC4P09017 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC4P09017 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC4P09017 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC4P09017 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC4P09017 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.18■□□□□ 0.98
HOXC4P09017 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC4P09017 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.18■□□□□ 0.98
HOXC4P09017 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC4P09017 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC4P09017 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC4P09017 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC4P09017 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HOXC4P09017 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.17■□□□□ 0.98
HOXC4P09017 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
HOXC4P09017 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC4P09017 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC4P09017 KRT18P11-201ENST00000435214 1283 ntBASIC21.17■□□□□ 0.98
HOXC4P09017 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.17■□□□□ 0.98
HOXC4P09017 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.17■□□□□ 0.98
HOXC4P09017 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.17■□□□□ 0.98
HOXC4P09017 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
HOXC4P09017 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC4P09017 AC139530.1-201ENST00000575312 1977 ntBASIC21.17■□□□□ 0.98
HOXC4P09017 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
HOXC4P09017 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC4P09017 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HOXC4P09017 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
HOXC4P09017 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.16■□□□□ 0.98
HOXC4P09017 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.16■□□□□ 0.98
HOXC4P09017 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC4P09017 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.16■□□□□ 0.98
HOXC4P09017 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
HOXC4P09017 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC4P09017 AC016769.1-201ENST00000409132 1010 ntBASIC21.16■□□□□ 0.98
HOXC4P09017 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.16■□□□□ 0.98
HOXC4P09017 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
HOXC4P09017 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HOXC4P09017 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.15■□□□□ 0.98
HOXC4P09017 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC4P09017 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC4P09017 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC4P09017 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC4P09017 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.15■□□□□ 0.98
HOXC4P09017 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.15■□□□□ 0.98
HOXC4P09017 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.15■□□□□ 0.98
HOXC4P09017 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC4P09017 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC4P09017 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC4P09017 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HOXC4P09017 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
HOXC4P09017 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HOXC4P09017 AP006587.3-201ENST00000525742 1516 ntBASIC21.14■□□□□ 0.98
HOXC4P09017 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.98
HOXC4P09017 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HOXC4P09017 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HOXC4P09017 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.14■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms