Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHOX2O60902 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
SHOX2O60902 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.72■■□□□ 1.07
SHOX2O60902 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHOX2O60902 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.72■■□□□ 1.07
SHOX2O60902 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SHOX2O60902 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.72■■□□□ 1.07
SHOX2O60902 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHOX2O60902 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHOX2O60902 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
SHOX2O60902 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
SHOX2O60902 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SHOX2O60902 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHOX2O60902 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
SHOX2O60902 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHOX2O60902 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHOX2O60902 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.71■■□□□ 1.07
SHOX2O60902 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SHOX2O60902 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
SHOX2O60902 ECEL1P2-201ENST00000461596 1295 ntBASIC21.71■■□□□ 1.07
SHOX2O60902 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SHOX2O60902 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHOX2O60902 AC087289.5-201ENST00000586076 3175 ntBASIC21.71■■□□□ 1.07
SHOX2O60902 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHOX2O60902 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.71■■□□□ 1.07
SHOX2O60902 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
SHOX2O60902 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHOX2O60902 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHOX2O60902 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHOX2O60902 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHOX2O60902 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.7■■□□□ 1.07
SHOX2O60902 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.07
SHOX2O60902 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.07
SHOX2O60902 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.7■■□□□ 1.06
SHOX2O60902 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHOX2O60902 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHOX2O60902 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SHOX2O60902 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHOX2O60902 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.7■■□□□ 1.06
SHOX2O60902 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.7■■□□□ 1.06
SHOX2O60902 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SHOX2O60902 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.7■■□□□ 1.06
SHOX2O60902 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHOX2O60902 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
SHOX2O60902 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
SHOX2O60902 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
SHOX2O60902 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.69■■□□□ 1.06
SHOX2O60902 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHOX2O60902 CA15P2-201ENST00000611168 834 ntBASIC21.69■■□□□ 1.06
SHOX2O60902 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHOX2O60902 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.69■■□□□ 1.06
SHOX2O60902 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHOX2O60902 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.69■■□□□ 1.06
SHOX2O60902 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.69■■□□□ 1.06
SHOX2O60902 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.69■■□□□ 1.06
SHOX2O60902 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
SHOX2O60902 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.69■■□□□ 1.06
SHOX2O60902 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.68■■□□□ 1.06
SHOX2O60902 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHOX2O60902 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHOX2O60902 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHOX2O60902 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHOX2O60902 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHOX2O60902 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHOX2O60902 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHOX2O60902 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHOX2O60902 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.68■■□□□ 1.06
SHOX2O60902 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHOX2O60902 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
SHOX2O60902 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.67■■□□□ 1.06
SHOX2O60902 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHOX2O60902 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHOX2O60902 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHOX2O60902 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHOX2O60902 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHOX2O60902 OXCT2P1-201ENST00000447263 1535 ntBASIC21.67■■□□□ 1.06
SHOX2O60902 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.67■■□□□ 1.06
SHOX2O60902 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SHOX2O60902 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.67■■□□□ 1.06
SHOX2O60902 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SHOX2O60902 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHOX2O60902 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.67■■□□□ 1.06
SHOX2O60902 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHOX2O60902 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.66■■□□□ 1.06
SHOX2O60902 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHOX2O60902 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SHOX2O60902 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.66■■□□□ 1.06
SHOX2O60902 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SHOX2O60902 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.66■■□□□ 1.06
SHOX2O60902 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.66■■□□□ 1.06
SHOX2O60902 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.66■■□□□ 1.06
SHOX2O60902 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHOX2O60902 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SHOX2O60902 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SHOX2O60902 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SHOX2O60902 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHOX2O60902 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHOX2O60902 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
SHOX2O60902 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.65■■□□□ 1.06
SHOX2O60902 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms