Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC24.37■■□□□ 1.49
MSH4O15457 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
MSH4O15457 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC24.37■■□□□ 1.49
MSH4O15457 DUX4L2-201ENST00000561772 1275 ntBASIC24.37■■□□□ 1.49
MSH4O15457 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC24.37■■□□□ 1.49
MSH4O15457 DUX4L6-201ENST00000626483 1275 ntBASIC24.37■■□□□ 1.49
MSH4O15457 DUX4L1-201ENST00000627662 1275 ntBASIC24.37■■□□□ 1.49
MSH4O15457 DUX4L8-201ENST00000629013 1275 ntBASIC24.37■■□□□ 1.49
MSH4O15457 DUX4L3-201ENST00000630187 1275 ntBASIC24.37■■□□□ 1.49
MSH4O15457 DUX4L7-201ENST00000630678 1275 ntBASIC24.37■■□□□ 1.49
MSH4O15457 DUX4L5-201ENST00000630834 1275 ntBASIC24.37■■□□□ 1.49
MSH4O15457 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
MSH4O15457 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC24.37■■□□□ 1.49
MSH4O15457 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
MSH4O15457 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH4O15457 PXK-203ENST00000383715 1756 ntTSL 5 BASIC24.37■■□□□ 1.49
MSH4O15457 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC24.36■■□□□ 1.49
MSH4O15457 LTK-203ENST00000453182 2412 ntTSL 2 BASIC24.36■■□□□ 1.49
MSH4O15457 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
MSH4O15457 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH4O15457 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH4O15457 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC24.36■■□□□ 1.49
MSH4O15457 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH4O15457 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH4O15457 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH4O15457 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
MSH4O15457 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH4O15457 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC24.36■■□□□ 1.49
MSH4O15457 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC24.36■■□□□ 1.49
MSH4O15457 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC24.36■■□□□ 1.49
MSH4O15457 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC24.36■■□□□ 1.49
MSH4O15457 AC133561.1-201ENST00000568600 2415 ntBASIC24.36■■□□□ 1.49
MSH4O15457 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC24.36■■□□□ 1.49
MSH4O15457 AP004607.7-201ENST00000527152 1677 ntBASIC24.36■■□□□ 1.49
MSH4O15457 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
MSH4O15457 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH4O15457 AC233723.2-201ENST00000623798 2106 ntBASIC24.35■■□□□ 1.49
MSH4O15457 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC24.35■■□□□ 1.49
MSH4O15457 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC24.35■■□□□ 1.49
MSH4O15457 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC24.35■■□□□ 1.49
MSH4O15457 ANKRD20A6P-201ENST00000618763 204 ntBASIC24.35■■□□□ 1.49
MSH4O15457 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
MSH4O15457 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH4O15457 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH4O15457 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH4O15457 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH4O15457 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
MSH4O15457 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
MSH4O15457 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
MSH4O15457 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
MSH4O15457 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC24.34■■□□□ 1.49
MSH4O15457 KRT18P14-201ENST00000534205 1250 ntBASIC24.34■■□□□ 1.49
MSH4O15457 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
MSH4O15457 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
MSH4O15457 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC24.34■■□□□ 1.49
MSH4O15457 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC24.34■■□□□ 1.49
MSH4O15457 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
MSH4O15457 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
MSH4O15457 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
MSH4O15457 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC24.33■■□□□ 1.49
MSH4O15457 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
MSH4O15457 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH4O15457 AC034268.1-201ENST00000441047 882 ntBASIC24.33■■□□□ 1.49
MSH4O15457 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH4O15457 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
MSH4O15457 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC24.33■■□□□ 1.49
MSH4O15457 AC005224.4-201ENST00000583262 1652 ntBASIC24.33■■□□□ 1.49
MSH4O15457 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC24.33■■□□□ 1.49
MSH4O15457 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
MSH4O15457 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC24.33■■□□□ 1.48
MSH4O15457 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.48
MSH4O15457 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.48
MSH4O15457 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH4O15457 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH4O15457 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
MSH4O15457 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH4O15457 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH4O15457 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH4O15457 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC24.32■■□□□ 1.48
MSH4O15457 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC24.32■■□□□ 1.48
MSH4O15457 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH4O15457 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH4O15457 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC24.32■■□□□ 1.48
MSH4O15457 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC24.32■■□□□ 1.48
MSH4O15457 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH4O15457 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH4O15457 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH4O15457 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH4O15457 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH4O15457 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH4O15457 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC24.31■■□□□ 1.48
MSH4O15457 AC009237.3-201ENST00000393279 1427 ntBASIC24.31■■□□□ 1.48
MSH4O15457 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH4O15457 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH4O15457 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH4O15457 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC24.31■■□□□ 1.48
MSH4O15457 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH4O15457 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
MSH4O15457 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
MSH4O15457 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms