Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
HDAC3O15379 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
HDAC3O15379 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
HDAC3O15379 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.02■□□□□ 0.96
HDAC3O15379 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.02■□□□□ 0.96
HDAC3O15379 AL499627.2-201ENST00000606283 725 ntBASIC21.02■□□□□ 0.96
HDAC3O15379 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
HDAC3O15379 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
HDAC3O15379 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.02■□□□□ 0.95
HDAC3O15379 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC3O15379 AF106564.1-201ENST00000607058 2553 ntBASIC21.01■□□□□ 0.95
HDAC3O15379 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC3O15379 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC3O15379 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC3O15379 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC3O15379 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC3O15379 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.01■□□□□ 0.95
HDAC3O15379 AC092028.1-203ENST00000608262 953 ntBASIC21.01■□□□□ 0.95
HDAC3O15379 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC3O15379 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC3O15379 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.01■□□□□ 0.95
HDAC3O15379 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
HDAC3O15379 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21■□□□□ 0.95
HDAC3O15379 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21■□□□□ 0.95
HDAC3O15379 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
HDAC3O15379 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
HDAC3O15379 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HDAC3O15379 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21■□□□□ 0.95
HDAC3O15379 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21■□□□□ 0.95
HDAC3O15379 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
HDAC3O15379 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HDAC3O15379 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21■□□□□ 0.95
HDAC3O15379 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21■□□□□ 0.95
HDAC3O15379 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
HDAC3O15379 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21■□□□□ 0.95
HDAC3O15379 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
HDAC3O15379 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
HDAC3O15379 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21■□□□□ 0.95
HDAC3O15379 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21■□□□□ 0.95
HDAC3O15379 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21■□□□□ 0.95
HDAC3O15379 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21■□□□□ 0.95
HDAC3O15379 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDAC3O15379 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HDAC3O15379 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
HDAC3O15379 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HDAC3O15379 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
HDAC3O15379 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.99■□□□□ 0.95
HDAC3O15379 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDAC3O15379 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.99■□□□□ 0.95
HDAC3O15379 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
HDAC3O15379 AC073130.3-201ENST00000624389 2278 ntBASIC20.99■□□□□ 0.95
HDAC3O15379 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HDAC3O15379 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.99■□□□□ 0.95
HDAC3O15379 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
HDAC3O15379 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.98■□□□□ 0.95
HDAC3O15379 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.98■□□□□ 0.95
HDAC3O15379 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
HDAC3O15379 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.98■□□□□ 0.95
HDAC3O15379 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.98■□□□□ 0.95
HDAC3O15379 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC3O15379 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDAC3O15379 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HDAC3O15379 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HDAC3O15379 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDAC3O15379 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDAC3O15379 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDAC3O15379 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
HDAC3O15379 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.97■□□□□ 0.95
HDAC3O15379 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDAC3O15379 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDAC3O15379 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDAC3O15379 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
HDAC3O15379 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.96■□□□□ 0.95
HDAC3O15379 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
HDAC3O15379 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
HDAC3O15379 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
HDAC3O15379 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
HDAC3O15379 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDAC3O15379 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDAC3O15379 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
HDAC3O15379 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.96■□□□□ 0.95
HDAC3O15379 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDAC3O15379 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDAC3O15379 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
HDAC3O15379 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC3O15379 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC3O15379 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms