Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TMX2-CTNND1H3BSU7 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.18■□□□□ 0.98
TMX2-CTNND1H3BSU7 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
TMX2-CTNND1H3BSU7 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TMX2-CTNND1H3BSU7 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
TMX2-CTNND1H3BSU7 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.18■□□□□ 0.98
TMX2-CTNND1H3BSU7 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TMX2-CTNND1H3BSU7 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.18■□□□□ 0.98
TMX2-CTNND1H3BSU7 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.18■□□□□ 0.98
TMX2-CTNND1H3BSU7 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.18■□□□□ 0.98
TMX2-CTNND1H3BSU7 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TMX2-CTNND1H3BSU7 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
TMX2-CTNND1H3BSU7 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TMX2-CTNND1H3BSU7 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TMX2-CTNND1H3BSU7 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.17■□□□□ 0.98
TMX2-CTNND1H3BSU7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TMX2-CTNND1H3BSU7 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TMX2-CTNND1H3BSU7 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TMX2-CTNND1H3BSU7 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TMX2-CTNND1H3BSU7 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.17■□□□□ 0.98
TMX2-CTNND1H3BSU7 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TMX2-CTNND1H3BSU7 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TMX2-CTNND1H3BSU7 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TMX2-CTNND1H3BSU7 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.17■□□□□ 0.98
TMX2-CTNND1H3BSU7 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TMX2-CTNND1H3BSU7 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TMX2-CTNND1H3BSU7 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TMX2-CTNND1H3BSU7 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.16■□□□□ 0.98
TMX2-CTNND1H3BSU7 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.16■□□□□ 0.98
TMX2-CTNND1H3BSU7 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.16■□□□□ 0.98
TMX2-CTNND1H3BSU7 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TMX2-CTNND1H3BSU7 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.16■□□□□ 0.98
TMX2-CTNND1H3BSU7 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TMX2-CTNND1H3BSU7 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.16■□□□□ 0.98
TMX2-CTNND1H3BSU7 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
TMX2-CTNND1H3BSU7 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 AC087239.1-201ENST00000622671 572 ntBASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TMX2-CTNND1H3BSU7 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.14■□□□□ 0.98
TMX2-CTNND1H3BSU7 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TMX2-CTNND1H3BSU7 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
TMX2-CTNND1H3BSU7 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.14■□□□□ 0.97
TMX2-CTNND1H3BSU7 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.14■□□□□ 0.97
TMX2-CTNND1H3BSU7 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.14■□□□□ 0.97
TMX2-CTNND1H3BSU7 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
TMX2-CTNND1H3BSU7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
TMX2-CTNND1H3BSU7 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
TMX2-CTNND1H3BSU7 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TMX2-CTNND1H3BSU7 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TMX2-CTNND1H3BSU7 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TMX2-CTNND1H3BSU7 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
TMX2-CTNND1H3BSU7 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TMX2-CTNND1H3BSU7 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TMX2-CTNND1H3BSU7 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.13■□□□□ 0.97
TMX2-CTNND1H3BSU7 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.13■□□□□ 0.97
TMX2-CTNND1H3BSU7 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TMX2-CTNND1H3BSU7 AL137060.1-201ENST00000618151 2648 ntBASIC21.13■□□□□ 0.97
TMX2-CTNND1H3BSU7 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TMX2-CTNND1H3BSU7 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 AC016769.1-201ENST00000409132 1010 ntBASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.12■□□□□ 0.97
TMX2-CTNND1H3BSU7 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TMX2-CTNND1H3BSU7 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms