Protein–RNA interactions for Protein: P40084

RTR1, RNA polymerase II subunit B1 CTD phosphatase RTR1, yeastyeast

Predicted RBP Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RTR1P40084 GLR1YPL091W 1452 nt12.71□□□□□ -0.38
RTR1P40084 PLB1YMR008C 1995 nt12.67□□□□□ -0.38
RTR1P40084 PEX2YJL210W 816 nt12.66□□□□□ -0.38
RTR1P40084 DPS1YLL018C 1674 nt12.65□□□□□ -0.38
RTR1P40084 RPL4BYDR012W 1089 nt12.65□□□□□ -0.38
RTR1P40084 YML089CYML089C 369 nt12.65□□□□□ -0.38
RTR1P40084 RPL4AYBR031W 1089 nt12.65□□□□□ -0.38
RTR1P40084 HIP1YGR191W 1812 nt12.63□□□□□ -0.39
RTR1P40084 ATG15YCR068W 1563 nt12.63□□□□□ -0.39
RTR1P40084 GAP1YKR039W 1809 nt12.61□□□□□ -0.39
RTR1P40084 RPS14BYJL191W 417 nt12.61□□□□□ -0.39
RTR1P40084 CLB6YGR109C 1143 nt12.59□□□□□ -0.39
RTR1P40084 BMT6YLR063W 1098 nt12.59□□□□□ -0.39
RTR1P40084 TIF6YPR016C 738 nt12.59□□□□□ -0.39
RTR1P40084 UTH1YKR042W 1098 nt12.57□□□□□ -0.4
RTR1P40084 NRT1YOR071C 1797 nt12.53□□□□□ -0.4
RTR1P40084 MET28YIR017C 564 nt12.5□□□□□ -0.41
RTR1P40084 UTR1YJR049C 1593 nt12.49□□□□□ -0.41
RTR1P40084 IRC24YIR036C 792 nt12.49□□□□□ -0.41
RTR1P40084 AAC1YMR056C 930 nt12.49□□□□□ -0.41
RTR1P40084 SNF1YDR477W 1902 nt12.49□□□□□ -0.41
RTR1P40084 RBG2YGR173W 1107 nt12.46□□□□□ -0.41
RTR1P40084 SDH5YOL071W 489 nt12.45□□□□□ -0.42
RTR1P40084 RDN37-1RDN37-1 5354 nt12.44□□□□□ -0.42
RTR1P40084 RDN37-2RDN37-2 5354 nt12.44□□□□□ -0.42
RTR1P40084 DIF1YLR437C 402 nt12.43□□□□□ -0.42
RTR1P40084 NVJ2YPR091C 2313 nt12.42□□□□□ -0.42
RTR1P40084 TSC10YBR265W 963 nt12.42□□□□□ -0.42
RTR1P40084 PRM5YIL117C 957 nt12.41□□□□□ -0.42
RTR1P40084 YLR111WYLR111W 333 nt12.4□□□□□ -0.42
RTR1P40084 YMR226CYMR226C 804 nt12.4□□□□□ -0.42
RTR1P40084 YGR012WYGR012W 1182 nt12.38□□□□□ -0.43
RTR1P40084 CAB5YDR196C 726 nt12.37□□□□□ -0.43
RTR1P40084 YLR279WYLR279W 390 nt12.36□□□□□ -0.43
RTR1P40084 FIT3YOR383C 615 nt12.36□□□□□ -0.43
RTR1P40084 RAD23YEL037C 1197 nt12.35□□□□□ -0.43
RTR1P40084 YAR028WYAR028W 705 nt12.34□□□□□ -0.43
RTR1P40084 ZTA1YBR046C 1005 nt12.32□□□□□ -0.44
RTR1P40084 MSB4YOL112W 1479 nt12.31□□□□□ -0.44
RTR1P40084 BIO5YNR056C 1686 nt12.31□□□□□ -0.44
RTR1P40084 MTG2YHR168W 1557 nt12.3□□□□□ -0.44
RTR1P40084 SAM35YHR083W 990 nt12.28□□□□□ -0.44
RTR1P40084 YLR437C-AYLR437C-A 228 nt12.28□□□□□ -0.44
RTR1P40084 ALG12YNR030W 1656 nt12.28□□□□□ -0.44
RTR1P40084 AKR2YOR034C 2250 nt12.27□□□□□ -0.45
RTR1P40084 ALP1YNL270C 1722 nt12.25□□□□□ -0.45
RTR1P40084 RIB3YDR487C 627 nt12.24□□□□□ -0.45
RTR1P40084 ALD4YOR374W 1560 nt12.23□□□□□ -0.45
RTR1P40084 YER190C-AYER190C-A 576 nt12.22□□□□□ -0.45
RTR1P40084 YGR296C-AYGR296C-A 576 nt12.22□□□□□ -0.45
RTR1P40084 HIF1YLL022C 1158 nt12.22□□□□□ -0.45
RTR1P40084 YML133W-AYML133W-A 576 nt12.22□□□□□ -0.45
RTR1P40084 YNL339W-AYNL339W-A 576 nt12.22□□□□□ -0.45
RTR1P40084 YPL283W-AYPL283W-A 576 nt12.22□□□□□ -0.45
RTR1P40084 SED1YDR077W 1017 nt12.17□□□□□ -0.46
RTR1P40084 YPL222C-AYPL222C-A 246 nt12.17□□□□□ -0.46
RTR1P40084 DBP1YPL119C 1854 nt12.15□□□□□ -0.46
RTR1P40084 LIP1YMR298W 453 nt12.13□□□□□ -0.47
RTR1P40084 SAM1YLR180W 1149 nt12.11□□□□□ -0.47
RTR1P40084 HXT1YHR094C 1713 nt12.1□□□□□ -0.47
RTR1P40084 YBL086CYBL086C 1401 nt12.1□□□□□ -0.47
RTR1P40084 YPL251WYPL251W 303 nt12.06□□□□□ -0.48
RTR1P40084 GND1YHR183W 1470 nt12.06□□□□□ -0.48
RTR1P40084 FCY21YER060W 1587 nt12.05□□□□□ -0.48
RTR1P40084 UGA4YDL210W 1716 nt12.05□□□□□ -0.48
RTR1P40084 LOT5YKL183W 921 nt12.04□□□□□ -0.48
RTR1P40084 PBP1YGR178C 2169 nt12.03□□□□□ -0.48
RTR1P40084 SMM1YNR015W 1155 nt12.01□□□□□ -0.49
RTR1P40084 LEU9YOR108W 1815 nt12.01□□□□□ -0.49
RTR1P40084 BRR1YPR057W 1026 nt11.99□□□□□ -0.49
RTR1P40084 SHY1YGR112W 1170 nt11.98□□□□□ -0.49
RTR1P40084 NAR1YNL240C 1476 nt11.97□□□□□ -0.49
RTR1P40084 APT2YDR441C 546 nt11.97□□□□□ -0.49
RTR1P40084 TOA2YKL058W 369 nt11.97□□□□□ -0.49
RTR1P40084 MEP3YPR138C 1470 nt11.95□□□□□ -0.5
RTR1P40084 YPI1YFR003C 468 nt11.95□□□□□ -0.5
RTR1P40084 YMR103CYMR103C 363 nt11.95□□□□□ -0.5
RTR1P40084 PRY1YJL079C 900 nt11.94□□□□□ -0.5
RTR1P40084 ADH1YOL086C 1047 nt11.94□□□□□ -0.5
RTR1P40084 CYT2YKL087C 675 nt11.93□□□□□ -0.5
RTR1P40084 YNR029CYNR029C 1290 nt11.92□□□□□ -0.5
RTR1P40084 UFO1YML088W 2007 nt11.92□□□□□ -0.5
RTR1P40084 ZRT3YKL175W 1512 nt11.91□□□□□ -0.5
RTR1P40084 GND2YGR256W 1479 nt11.89□□□□□ -0.51
RTR1P40084 LSB3YFR024C-A 1380 nt11.88□□□□□ -0.51
RTR1P40084 TRT2tT(CGU)K 72 nt11.87□□□□□ -0.51
RTR1P40084 YJL195CYJL195C 702 nt11.86□□□□□ -0.51
RTR1P40084 URA6YKL024C 615 nt11.84□□□□□ -0.51
RTR1P40084 RIB2YOL066C 1776 nt11.84□□□□□ -0.51
RTR1P40084 MCH5YOR306C 1566 nt11.84□□□□□ -0.51
RTR1P40084 CSM1YCR086W 573 nt11.83□□□□□ -0.52
RTR1P40084 HXT12YIL170W 1374 nt11.82□□□□□ -0.52
RTR1P40084 FUN14YAL008W 597 nt11.82□□□□□ -0.52
RTR1P40084 SSN3YPL042C 1668 nt11.81□□□□□ -0.52
RTR1P40084 YJL067WYJL067W 351 nt11.81□□□□□ -0.52
RTR1P40084 VRG4YGL225W 1014 nt11.8□□□□□ -0.52
RTR1P40084 YJL055WYJL055W 738 nt11.8□□□□□ -0.52
RTR1P40084 OYE3YPL171C 1203 nt11.8□□□□□ -0.52
RTR1P40084 RAD51YER095W 1203 nt11.78□□□□□ -0.52
RTR1P40084 BNI5YNL166C 1347 nt11.78□□□□□ -0.52
Retrieved 100 of 7,029 protein–RNA pairs in 42.7 ms