Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PCDHGA1Q9Y5H4 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
PCDHGA1Q9Y5H4 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.93■□□□□ 0.94
PCDHGA1Q9Y5H4 AC069152.1-201ENST00000438030 544 ntBASIC20.93■□□□□ 0.94
PCDHGA1Q9Y5H4 AL138781.1-201ENST00000566567 1274 ntBASIC20.93■□□□□ 0.94
PCDHGA1Q9Y5H4 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
PCDHGA1Q9Y5H4 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHGA1Q9Y5H4 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDHGA1Q9Y5H4 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.93■□□□□ 0.94
PCDHGA1Q9Y5H4 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.92■□□□□ 0.94
PCDHGA1Q9Y5H4 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHGA1Q9Y5H4 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.92■□□□□ 0.94
PCDHGA1Q9Y5H4 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHGA1Q9Y5H4 FAM201B-201ENST00000458407 597 ntBASIC20.92■□□□□ 0.94
PCDHGA1Q9Y5H4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
PCDHGA1Q9Y5H4 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.92■□□□□ 0.94
PCDHGA1Q9Y5H4 AL353803.4-201ENST00000565882 1934 ntBASIC20.92■□□□□ 0.94
PCDHGA1Q9Y5H4 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHGA1Q9Y5H4 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHGA1Q9Y5H4 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHGA1Q9Y5H4 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHGA1Q9Y5H4 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
PCDHGA1Q9Y5H4 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHGA1Q9Y5H4 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.91■□□□□ 0.94
PCDHGA1Q9Y5H4 AC133552.2-202ENST00000575694 574 ntBASIC20.91■□□□□ 0.94
PCDHGA1Q9Y5H4 AP001160.3-201ENST00000601484 763 ntBASIC20.91■□□□□ 0.94
PCDHGA1Q9Y5H4 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHGA1Q9Y5H4 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHGA1Q9Y5H4 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 AF201337.1-201ENST00000520239 748 ntBASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
PCDHGA1Q9Y5H4 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
PCDHGA1Q9Y5H4 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.89■□□□□ 0.93
PCDHGA1Q9Y5H4 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.89■□□□□ 0.93
PCDHGA1Q9Y5H4 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA1Q9Y5H4 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHGA1Q9Y5H4 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.89■□□□□ 0.93
PCDHGA1Q9Y5H4 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHGA1Q9Y5H4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA1Q9Y5H4 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA1Q9Y5H4 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA1Q9Y5H4 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA1Q9Y5H4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.87■□□□□ 0.93
PCDHGA1Q9Y5H4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
PCDHGA1Q9Y5H4 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
PCDHGA1Q9Y5H4 KRT18P20-201ENST00000548986 1279 ntBASIC20.87■□□□□ 0.93
PCDHGA1Q9Y5H4 MIR4651-201ENST00000582622 73 ntBASIC20.87■□□□□ 0.93
PCDHGA1Q9Y5H4 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA1Q9Y5H4 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.87■□□□□ 0.93
PCDHGA1Q9Y5H4 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PCDHGA1Q9Y5H4 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
PCDHGA1Q9Y5H4 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA1Q9Y5H4 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDHGA1Q9Y5H4 AC138932.3-201ENST00000567634 1902 ntBASIC20.86■□□□□ 0.93
PCDHGA1Q9Y5H4 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA1Q9Y5H4 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA1Q9Y5H4 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
PCDHGA1Q9Y5H4 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
PCDHGA1Q9Y5H4 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDHGA1Q9Y5H4 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.86■□□□□ 0.93
PCDHGA1Q9Y5H4 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDHGA1Q9Y5H4 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA1Q9Y5H4 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms