Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TM9SF3Q9HD45 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
TM9SF3Q9HD45 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TM9SF3Q9HD45 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TM9SF3Q9HD45 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.71■■□□□ 1.07
TM9SF3Q9HD45 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.71■■□□□ 1.07
TM9SF3Q9HD45 SMUG1P1-201ENST00000590640 811 ntBASIC21.71■■□□□ 1.07
TM9SF3Q9HD45 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TM9SF3Q9HD45 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.71■■□□□ 1.07
TM9SF3Q9HD45 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TM9SF3Q9HD45 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.71■■□□□ 1.07
TM9SF3Q9HD45 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TM9SF3Q9HD45 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
TM9SF3Q9HD45 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.7■■□□□ 1.06
TM9SF3Q9HD45 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
TM9SF3Q9HD45 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
TM9SF3Q9HD45 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.7■■□□□ 1.06
TM9SF3Q9HD45 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.7■■□□□ 1.06
TM9SF3Q9HD45 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.7■■□□□ 1.06
TM9SF3Q9HD45 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.7■■□□□ 1.06
TM9SF3Q9HD45 RAP2CP1-201ENST00000605103 478 ntBASIC21.7■■□□□ 1.06
TM9SF3Q9HD45 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
TM9SF3Q9HD45 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TM9SF3Q9HD45 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TM9SF3Q9HD45 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TM9SF3Q9HD45 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TM9SF3Q9HD45 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.69■■□□□ 1.06
TM9SF3Q9HD45 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.69■■□□□ 1.06
TM9SF3Q9HD45 AC073111.5-205ENST00000641717 521 ntBASIC21.69■■□□□ 1.06
TM9SF3Q9HD45 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TM9SF3Q9HD45 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.69■■□□□ 1.06
TM9SF3Q9HD45 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TM9SF3Q9HD45 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.69■■□□□ 1.06
TM9SF3Q9HD45 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.69■■□□□ 1.06
TM9SF3Q9HD45 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 CDCA4P2-201ENST00000441182 718 ntBASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TM9SF3Q9HD45 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TM9SF3Q9HD45 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TM9SF3Q9HD45 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TM9SF3Q9HD45 KRT19P1-201ENST00000405746 1186 ntBASIC21.66■■□□□ 1.06
TM9SF3Q9HD45 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.66■■□□□ 1.06
TM9SF3Q9HD45 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.66■■□□□ 1.06
TM9SF3Q9HD45 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.66■■□□□ 1.06
TM9SF3Q9HD45 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TM9SF3Q9HD45 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TM9SF3Q9HD45 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TM9SF3Q9HD45 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.65■■□□□ 1.06
TM9SF3Q9HD45 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
TM9SF3Q9HD45 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.65■■□□□ 1.06
TM9SF3Q9HD45 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.65■■□□□ 1.06
TM9SF3Q9HD45 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.65■■□□□ 1.06
TM9SF3Q9HD45 BID-214ENST00000617586 542 ntTSL 5 BASIC21.65■■□□□ 1.06
TM9SF3Q9HD45 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TM9SF3Q9HD45 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TM9SF3Q9HD45 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TM9SF3Q9HD45 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
TM9SF3Q9HD45 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
TM9SF3Q9HD45 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TM9SF3Q9HD45 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TM9SF3Q9HD45 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
TM9SF3Q9HD45 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.64■■□□□ 1.05
TM9SF3Q9HD45 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.64■■□□□ 1.05
TM9SF3Q9HD45 OXCT2P1-201ENST00000447263 1535 ntBASIC21.64■■□□□ 1.05
TM9SF3Q9HD45 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
TM9SF3Q9HD45 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 AC026185.1-201ENST00000445748 174 ntBASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.63■■□□□ 1.05
TM9SF3Q9HD45 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms