Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC27.76■■■□□ 2.03
USP42Q9H9J4 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC27.76■■■□□ 2.03
USP42Q9H9J4 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
USP42Q9H9J4 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
USP42Q9H9J4 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC27.76■■■□□ 2.03
USP42Q9H9J4 AL121832.2-201ENST00000610979 668 ntBASIC27.76■■■□□ 2.03
USP42Q9H9J4 MAZ-216ENST00000616501 991 ntTSL 5 BASIC27.76■■■□□ 2.03
USP42Q9H9J4 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
USP42Q9H9J4 OXCT2P1-201ENST00000447263 1535 ntBASIC27.76■■■□□ 2.03
USP42Q9H9J4 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC27.75■■■□□ 2.03
USP42Q9H9J4 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
USP42Q9H9J4 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC27.75■■■□□ 2.03
USP42Q9H9J4 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
USP42Q9H9J4 TSPY6P-201ENST00000448518 926 ntBASIC27.75■■■□□ 2.03
USP42Q9H9J4 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC27.75■■■□□ 2.03
USP42Q9H9J4 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC27.75■■■□□ 2.03
USP42Q9H9J4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC27.75■■■□□ 2.03
USP42Q9H9J4 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
USP42Q9H9J4 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC27.75■■■□□ 2.03
USP42Q9H9J4 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
USP42Q9H9J4 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
USP42Q9H9J4 TSPY20P-201ENST00000450910 630 ntBASIC27.74■■■□□ 2.03
USP42Q9H9J4 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC27.74■■■□□ 2.03
USP42Q9H9J4 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC27.74■■■□□ 2.03
USP42Q9H9J4 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
USP42Q9H9J4 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC27.74■■■□□ 2.03
USP42Q9H9J4 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC27.74■■■□□ 2.03
USP42Q9H9J4 ASL-203ENST00000380839 1765 ntTSL 5 BASIC27.74■■■□□ 2.03
USP42Q9H9J4 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
USP42Q9H9J4 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC27.74■■■□□ 2.03
USP42Q9H9J4 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
USP42Q9H9J4 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC27.74■■■□□ 2.03
USP42Q9H9J4 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC27.73■■■□□ 2.03
USP42Q9H9J4 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC27.73■■■□□ 2.03
USP42Q9H9J4 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
USP42Q9H9J4 SLC7A5P2-201ENST00000553010 536 ntBASIC27.73■■■□□ 2.03
USP42Q9H9J4 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC27.73■■■□□ 2.03
USP42Q9H9J4 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
USP42Q9H9J4 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
USP42Q9H9J4 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC27.72■■■□□ 2.03
USP42Q9H9J4 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
USP42Q9H9J4 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC27.72■■■□□ 2.03
USP42Q9H9J4 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
USP42Q9H9J4 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
USP42Q9H9J4 DUX4L16-201ENST00000555130 1264 ntBASIC27.72■■■□□ 2.03
USP42Q9H9J4 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC27.72■■■□□ 2.03
USP42Q9H9J4 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC27.72■■■□□ 2.03
USP42Q9H9J4 AC104187.1-201ENST00000607510 612 ntBASIC27.72■■■□□ 2.03
USP42Q9H9J4 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC27.72■■■□□ 2.03
USP42Q9H9J4 AC066615.1-201ENST00000640911 628 ntBASIC27.72■■■□□ 2.03
USP42Q9H9J4 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
USP42Q9H9J4 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
USP42Q9H9J4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
USP42Q9H9J4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC27.71■■■□□ 2.03
USP42Q9H9J4 AC083906.2-201ENST00000511578 360 ntBASIC27.71■■■□□ 2.03
USP42Q9H9J4 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
USP42Q9H9J4 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC27.71■■■□□ 2.03
USP42Q9H9J4 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
USP42Q9H9J4 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
USP42Q9H9J4 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC27.7■■■□□ 2.03
USP42Q9H9J4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
USP42Q9H9J4 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC27.7■■■□□ 2.03
USP42Q9H9J4 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC27.7■■■□□ 2.03
USP42Q9H9J4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC27.7■■■□□ 2.03
USP42Q9H9J4 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
USP42Q9H9J4 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.03
USP42Q9H9J4 H19-210ENST00000439725 1929 ntTSL 2 BASIC27.7■■■□□ 2.02
USP42Q9H9J4 KRT87P-202ENST00000534226 1464 ntBASIC27.7■■■□□ 2.02
USP42Q9H9J4 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
USP42Q9H9J4 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
USP42Q9H9J4 KRT18P6-201ENST00000555540 1265 ntBASIC27.69■■■□□ 2.02
USP42Q9H9J4 TFG-210ENST00000620299 1289 ntTSL 5 BASIC27.69■■■□□ 2.02
USP42Q9H9J4 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
USP42Q9H9J4 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
USP42Q9H9J4 AC231657.2-201ENST00000624556 255 ntBASIC27.69■■■□□ 2.02
USP42Q9H9J4 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC27.69■■■□□ 2.02
USP42Q9H9J4 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
USP42Q9H9J4 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC27.69■■■□□ 2.02
USP42Q9H9J4 AC005224.4-201ENST00000583262 1652 ntBASIC27.69■■■□□ 2.02
USP42Q9H9J4 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC27.69■■■□□ 2.02
USP42Q9H9J4 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
USP42Q9H9J4 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC27.68■■■□□ 2.02
USP42Q9H9J4 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC27.68■■■□□ 2.02
USP42Q9H9J4 METTL15-202ENST00000403099 795 ntTSL 5 BASIC27.68■■■□□ 2.02
USP42Q9H9J4 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC27.68■■■□□ 2.02
USP42Q9H9J4 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
USP42Q9H9J4 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
USP42Q9H9J4 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC27.68■■■□□ 2.02
USP42Q9H9J4 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC27.68■■■□□ 2.02
USP42Q9H9J4 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC27.67■■■□□ 2.02
USP42Q9H9J4 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC27.67■■■□□ 2.02
USP42Q9H9J4 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC27.67■■■□□ 2.02
USP42Q9H9J4 AC092068.2-201ENST00000590491 1708 ntBASIC27.67■■■□□ 2.02
USP42Q9H9J4 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC27.67■■■□□ 2.02
USP42Q9H9J4 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC27.67■■■□□ 2.02
USP42Q9H9J4 ANOS2P-203ENST00000472227 1816 ntBASIC27.67■■■□□ 2.02
USP42Q9H9J4 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
USP42Q9H9J4 AL353803.4-201ENST00000565882 1934 ntBASIC27.67■■■□□ 2.02
USP42Q9H9J4 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC27.67■■■□□ 2.02
USP42Q9H9J4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC27.67■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms