Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC24.3■■□□□ 1.48
UPF3AQ9H1J1 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 AC007322.1-201ENST00000426983 750 ntBASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC24.29■■□□□ 1.48
UPF3AQ9H1J1 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 METTL15-202ENST00000403099 795 ntTSL 5 BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 AC005181.1-201ENST00000604782 1256 ntBASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 PARP1-210ENST00000629232 477 ntTSL 5 BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 MYCNOS-205ENST00000641950 531 ntBASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
UPF3AQ9H1J1 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
UPF3AQ9H1J1 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC24.27■■□□□ 1.48
UPF3AQ9H1J1 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC24.27■■□□□ 1.48
UPF3AQ9H1J1 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
UPF3AQ9H1J1 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
UPF3AQ9H1J1 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
UPF3AQ9H1J1 OAS3-207ENST00000551007 998 ntTSL 2 BASIC24.27■■□□□ 1.48
UPF3AQ9H1J1 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC24.27■■□□□ 1.48
UPF3AQ9H1J1 AP001160.3-201ENST00000601484 763 ntBASIC24.27■■□□□ 1.48
UPF3AQ9H1J1 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC24.27■■□□□ 1.48
UPF3AQ9H1J1 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC24.27■■□□□ 1.48
UPF3AQ9H1J1 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC24.27■■□□□ 1.48
UPF3AQ9H1J1 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 MFF-207ENST00000409565 1548 ntTSL 2 BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 AC055733.4-201ENST00000638462 1354 ntBASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 PXK-203ENST00000383715 1756 ntTSL 5 BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC24.26■■□□□ 1.47
UPF3AQ9H1J1 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
UPF3AQ9H1J1 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
UPF3AQ9H1J1 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
UPF3AQ9H1J1 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC24.25■■□□□ 1.47
UPF3AQ9H1J1 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC24.25■■□□□ 1.47
UPF3AQ9H1J1 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC24.25■■□□□ 1.47
UPF3AQ9H1J1 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
UPF3AQ9H1J1 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
UPF3AQ9H1J1 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
UPF3AQ9H1J1 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
UPF3AQ9H1J1 BRI3-207ENST00000539286 699 ntTSL 2 BASIC24.24■■□□□ 1.47
UPF3AQ9H1J1 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC24.24■■□□□ 1.47
UPF3AQ9H1J1 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
UPF3AQ9H1J1 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
UPF3AQ9H1J1 ABCB10P4-201ENST00000566803 2184 ntBASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
UPF3AQ9H1J1 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
UPF3AQ9H1J1 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC24.22■■□□□ 1.47
UPF3AQ9H1J1 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
UPF3AQ9H1J1 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
UPF3AQ9H1J1 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms