Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
NKX3-1Q99801 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NKX3-1Q99801 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX3-1Q99801 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX3-1Q99801 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX3-1Q99801 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC18.84■□□□□ 0.61
NKX3-1Q99801 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NKX3-1Q99801 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.84■□□□□ 0.61
NKX3-1Q99801 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
NKX3-1Q99801 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
NKX3-1Q99801 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX3-1Q99801 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX3-1Q99801 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NKX3-1Q99801 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.83■□□□□ 0.61
NKX3-1Q99801 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
NKX3-1Q99801 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
NKX3-1Q99801 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
NKX3-1Q99801 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.83■□□□□ 0.61
NKX3-1Q99801 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
NKX3-1Q99801 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
NKX3-1Q99801 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
NKX3-1Q99801 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NKX3-1Q99801 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX3-1Q99801 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NKX3-1Q99801 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX3-1Q99801 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX3-1Q99801 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX3-1Q99801 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NKX3-1Q99801 FP325331.1-202ENST00000623531 1380 ntBASIC18.82■□□□□ 0.6
NKX3-1Q99801 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.82■□□□□ 0.6
NKX3-1Q99801 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX3-1Q99801 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NKX3-1Q99801 GUSBP5-201ENST00000418136 578 ntBASIC18.82■□□□□ 0.6
NKX3-1Q99801 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NKX3-1Q99801 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.82■□□□□ 0.6
NKX3-1Q99801 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC18.82■□□□□ 0.6
NKX3-1Q99801 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX3-1Q99801 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.82■□□□□ 0.6
NKX3-1Q99801 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NKX3-1Q99801 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NKX3-1Q99801 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
NKX3-1Q99801 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
NKX3-1Q99801 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
NKX3-1Q99801 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX3-1Q99801 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
NKX3-1Q99801 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.81■□□□□ 0.6
NKX3-1Q99801 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX3-1Q99801 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC18.81■□□□□ 0.6
NKX3-1Q99801 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NKX3-1Q99801 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX3-1Q99801 DUX4L4-201ENST00000566884 1269 ntBASIC18.81■□□□□ 0.6
NKX3-1Q99801 AC131212.1-201ENST00000613771 668 ntBASIC18.81■□□□□ 0.6
NKX3-1Q99801 AC009086.3-201ENST00000623486 1008 ntBASIC18.81■□□□□ 0.6
NKX3-1Q99801 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX3-1Q99801 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NKX3-1Q99801 AF106564.1-201ENST00000607058 2553 ntBASIC18.81■□□□□ 0.6
NKX3-1Q99801 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX3-1Q99801 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX3-1Q99801 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
NKX3-1Q99801 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
NKX3-1Q99801 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NKX3-1Q99801 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX3-1Q99801 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NKX3-1Q99801 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX3-1Q99801 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
NKX3-1Q99801 Z92544.1-202ENST00000571933 1220 ntBASIC18.8■□□□□ 0.6
NKX3-1Q99801 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NKX3-1Q99801 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX3-1Q99801 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX3-1Q99801 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX3-1Q99801 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.8■□□□□ 0.6
NKX3-1Q99801 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX3-1Q99801 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX3-1Q99801 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX3-1Q99801 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.79■□□□□ 0.6
NKX3-1Q99801 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX3-1Q99801 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX3-1Q99801 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.79■□□□□ 0.6
NKX3-1Q99801 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX3-1Q99801 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX3-1Q99801 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX3-1Q99801 CD72-202ENST00000378430 585 ntTSL 3 BASIC18.79■□□□□ 0.6
NKX3-1Q99801 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
NKX3-1Q99801 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NKX3-1Q99801 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.79■□□□□ 0.6
NKX3-1Q99801 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NKX3-1Q99801 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
NKX3-1Q99801 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC18.79■□□□□ 0.6
NKX3-1Q99801 MIR4787-201ENST00000607364 84 ntBASIC18.79■□□□□ 0.6
NKX3-1Q99801 AC092028.1-203ENST00000608262 953 ntBASIC18.79■□□□□ 0.6
NKX3-1Q99801 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.79■□□□□ 0.6
NKX3-1Q99801 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NKX3-1Q99801 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX3-1Q99801 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX3-1Q99801 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX3-1Q99801 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.79■□□□□ 0.6
NKX3-1Q99801 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX3-1Q99801 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
NKX3-1Q99801 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NKX3-1Q99801 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms