Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC23.65■■□□□ 1.38
LRCH3Q96II8 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
LRCH3Q96II8 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
LRCH3Q96II8 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
LRCH3Q96II8 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
LRCH3Q96II8 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
LRCH3Q96II8 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
LRCH3Q96II8 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
LRCH3Q96II8 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.38
LRCH3Q96II8 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC23.64■■□□□ 1.38
LRCH3Q96II8 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.37
LRCH3Q96II8 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC23.64■■□□□ 1.37
LRCH3Q96II8 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
LRCH3Q96II8 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC23.64■■□□□ 1.37
LRCH3Q96II8 AC073648.6-201ENST00000641589 218 ntBASIC23.64■■□□□ 1.37
LRCH3Q96II8 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
LRCH3Q96II8 ALDH1A3-203ENST00000557963 1670 ntBASIC23.64■■□□□ 1.37
LRCH3Q96II8 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
LRCH3Q96II8 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
LRCH3Q96II8 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
LRCH3Q96II8 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.63■■□□□ 1.37
LRCH3Q96II8 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
LRCH3Q96II8 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
LRCH3Q96II8 UBE2SP1-201ENST00000450587 669 ntBASIC23.63■■□□□ 1.37
LRCH3Q96II8 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
LRCH3Q96II8 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
LRCH3Q96II8 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC23.63■■□□□ 1.37
LRCH3Q96II8 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.63■■□□□ 1.37
LRCH3Q96II8 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
LRCH3Q96II8 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC23.63■■□□□ 1.37
LRCH3Q96II8 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
LRCH3Q96II8 KRT87P-202ENST00000534226 1464 ntBASIC23.62■■□□□ 1.37
LRCH3Q96II8 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC23.62■■□□□ 1.37
LRCH3Q96II8 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRCH3Q96II8 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRCH3Q96II8 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRCH3Q96II8 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRCH3Q96II8 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LRCH3Q96II8 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LRCH3Q96II8 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRCH3Q96II8 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.62■■□□□ 1.37
LRCH3Q96II8 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LRCH3Q96II8 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRCH3Q96II8 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
LRCH3Q96II8 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
LRCH3Q96II8 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.62■■□□□ 1.37
LRCH3Q96II8 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
LRCH3Q96II8 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
LRCH3Q96II8 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.61■■□□□ 1.37
LRCH3Q96II8 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
LRCH3Q96II8 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
LRCH3Q96II8 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
LRCH3Q96II8 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC23.61■■□□□ 1.37
LRCH3Q96II8 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
LRCH3Q96II8 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
LRCH3Q96II8 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
LRCH3Q96II8 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
LRCH3Q96II8 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
LRCH3Q96II8 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.61■■□□□ 1.37
LRCH3Q96II8 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
LRCH3Q96II8 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
LRCH3Q96II8 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
LRCH3Q96II8 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC23.6■■□□□ 1.37
LRCH3Q96II8 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC23.6■■□□□ 1.37
LRCH3Q96II8 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.6■■□□□ 1.37
LRCH3Q96II8 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
LRCH3Q96II8 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
LRCH3Q96II8 AC010536.3-201ENST00000620306 533 ntBASIC23.6■■□□□ 1.37
LRCH3Q96II8 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC23.6■■□□□ 1.37
LRCH3Q96II8 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.59■■□□□ 1.37
LRCH3Q96II8 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
LRCH3Q96II8 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
LRCH3Q96II8 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 AP001160.3-201ENST00000601484 763 ntBASIC23.59■■□□□ 1.37
LRCH3Q96II8 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC23.59■■□□□ 1.37
LRCH3Q96II8 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
LRCH3Q96II8 MYC-209ENST00000641252 345 ntBASIC23.59■■□□□ 1.37
LRCH3Q96II8 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
LRCH3Q96II8 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
LRCH3Q96II8 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LRCH3Q96II8 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LRCH3Q96II8 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LRCH3Q96II8 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LRCH3Q96II8 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LRCH3Q96II8 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.58■■□□□ 1.37
LRCH3Q96II8 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
LRCH3Q96II8 MIR718-201ENST00000390190 70 ntBASIC23.58■■□□□ 1.37
LRCH3Q96II8 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms