Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.81■□□□□ 0.92
CLIP3Q96DZ5 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.81■□□□□ 0.92
CLIP3Q96DZ5 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP3Q96DZ5 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP3Q96DZ5 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 DUX4L2-201ENST00000561772 1275 ntBASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 DUX4L6-201ENST00000626483 1275 ntBASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 DUX4L1-201ENST00000627662 1275 ntBASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 DUX4L8-201ENST00000629013 1275 ntBASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 DUX4L3-201ENST00000630187 1275 ntBASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 DUX4L7-201ENST00000630678 1275 ntBASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 DUX4L5-201ENST00000630834 1275 ntBASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 LINC02228-203ENST00000641970 1355 ntBASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP3Q96DZ5 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 KRT18P5-201ENST00000436075 1291 ntBASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP3Q96DZ5 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 CCDC92B-201ENST00000575506 885 ntBASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CLIP3Q96DZ5 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CLIP3Q96DZ5 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.77■□□□□ 0.92
CLIP3Q96DZ5 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLIP3Q96DZ5 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CLIP3Q96DZ5 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CLIP3Q96DZ5 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
CLIP3Q96DZ5 AC010141.3-201ENST00000456659 717 ntBASIC20.77■□□□□ 0.92
CLIP3Q96DZ5 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.77■□□□□ 0.92
CLIP3Q96DZ5 KRT18P14-201ENST00000534205 1250 ntBASIC20.77■□□□□ 0.92
CLIP3Q96DZ5 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
CLIP3Q96DZ5 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CLIP3Q96DZ5 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.77■□□□□ 0.91
CLIP3Q96DZ5 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CLIP3Q96DZ5 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLIP3Q96DZ5 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms