Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SLC44A3Q8N4M1 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC22.37■■□□□ 1.17
SLC44A3Q8N4M1 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
SLC44A3Q8N4M1 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SLC44A3Q8N4M1 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SLC44A3Q8N4M1 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SLC44A3Q8N4M1 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC22.37■■□□□ 1.17
SLC44A3Q8N4M1 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC22.37■■□□□ 1.17
SLC44A3Q8N4M1 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC22.37■■□□□ 1.17
SLC44A3Q8N4M1 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SLC44A3Q8N4M1 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.36■■□□□ 1.17
SLC44A3Q8N4M1 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SLC44A3Q8N4M1 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
SLC44A3Q8N4M1 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
SLC44A3Q8N4M1 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SLC44A3Q8N4M1 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC22.36■■□□□ 1.17
SLC44A3Q8N4M1 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC22.36■■□□□ 1.17
SLC44A3Q8N4M1 AC133552.2-202ENST00000575694 574 ntBASIC22.36■■□□□ 1.17
SLC44A3Q8N4M1 TBCB-214ENST00000629269 413 ntTSL 5 BASIC22.36■■□□□ 1.17
SLC44A3Q8N4M1 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SLC44A3Q8N4M1 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SLC44A3Q8N4M1 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SLC44A3Q8N4M1 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 AC105036.2-201ENST00000569468 176 ntBASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 PXK-203ENST00000383715 1756 ntTSL 5 BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
SLC44A3Q8N4M1 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SLC44A3Q8N4M1 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
SLC44A3Q8N4M1 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
SLC44A3Q8N4M1 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SLC44A3Q8N4M1 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
SLC44A3Q8N4M1 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
SLC44A3Q8N4M1 CNN2P6-201ENST00000439038 900 ntBASIC22.34■■□□□ 1.17
SLC44A3Q8N4M1 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SLC44A3Q8N4M1 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC22.34■■□□□ 1.17
SLC44A3Q8N4M1 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SLC44A3Q8N4M1 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SLC44A3Q8N4M1 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SLC44A3Q8N4M1 MFF-207ENST00000409565 1548 ntTSL 2 BASIC22.33■■□□□ 1.17
SLC44A3Q8N4M1 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
SLC44A3Q8N4M1 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SLC44A3Q8N4M1 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SLC44A3Q8N4M1 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.16
SLC44A3Q8N4M1 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC22.33■■□□□ 1.16
SLC44A3Q8N4M1 DUSP8P3-201ENST00000399571 1760 ntBASIC22.33■■□□□ 1.16
SLC44A3Q8N4M1 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SLC44A3Q8N4M1 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SLC44A3Q8N4M1 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
SLC44A3Q8N4M1 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
SLC44A3Q8N4M1 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
SLC44A3Q8N4M1 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
SLC44A3Q8N4M1 SERP1-208ENST00000491660 830 ntTSL 2 BASIC22.32■■□□□ 1.16
SLC44A3Q8N4M1 DET1-205ENST00000558413 583 ntTSL 4 BASIC22.32■■□□□ 1.16
SLC44A3Q8N4M1 AC008687.6-201ENST00000596318 630 ntBASIC22.32■■□□□ 1.16
SLC44A3Q8N4M1 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
SLC44A3Q8N4M1 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
SLC44A3Q8N4M1 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
SLC44A3Q8N4M1 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
SLC44A3Q8N4M1 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC22.31■■□□□ 1.16
SLC44A3Q8N4M1 AC093827.2-201ENST00000512654 315 ntBASIC22.31■■□□□ 1.16
SLC44A3Q8N4M1 AC098934.4-201ENST00000564127 592 ntBASIC22.31■■□□□ 1.16
SLC44A3Q8N4M1 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
SLC44A3Q8N4M1 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
SLC44A3Q8N4M1 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SLC44A3Q8N4M1 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SLC44A3Q8N4M1 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
SLC44A3Q8N4M1 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SLC44A3Q8N4M1 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SLC44A3Q8N4M1 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC22.3■■□□□ 1.16
SLC44A3Q8N4M1 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
SLC44A3Q8N4M1 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
SLC44A3Q8N4M1 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SLC44A3Q8N4M1 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SLC44A3Q8N4M1 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SLC44A3Q8N4M1 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SLC44A3Q8N4M1 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.29■■□□□ 1.16
SLC44A3Q8N4M1 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SLC44A3Q8N4M1 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
SLC44A3Q8N4M1 APTR-203ENST00000430801 583 ntTSL 5 BASIC22.29■■□□□ 1.16
SLC44A3Q8N4M1 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC22.29■■□□□ 1.16
SLC44A3Q8N4M1 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC22.29■■□□□ 1.16
SLC44A3Q8N4M1 AC010536.3-201ENST00000620306 533 ntBASIC22.29■■□□□ 1.16
SLC44A3Q8N4M1 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC22.29■■□□□ 1.16
SLC44A3Q8N4M1 LINC00543-201ENST00000567234 1845 ntBASIC22.29■■□□□ 1.16
SLC44A3Q8N4M1 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SLC44A3Q8N4M1 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms