Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
C9orf40Q8IXQ3 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
C9orf40Q8IXQ3 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
C9orf40Q8IXQ3 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
C9orf40Q8IXQ3 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
C9orf40Q8IXQ3 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
C9orf40Q8IXQ3 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.07■□□□□ 0.8
C9orf40Q8IXQ3 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.07■□□□□ 0.8
C9orf40Q8IXQ3 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.07■□□□□ 0.8
C9orf40Q8IXQ3 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
C9orf40Q8IXQ3 AC133561.1-201ENST00000568600 2415 ntBASIC20.07■□□□□ 0.8
C9orf40Q8IXQ3 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.07■□□□□ 0.8
C9orf40Q8IXQ3 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
C9orf40Q8IXQ3 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
C9orf40Q8IXQ3 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.06■□□□□ 0.8
C9orf40Q8IXQ3 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
C9orf40Q8IXQ3 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
C9orf40Q8IXQ3 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.06■□□□□ 0.8
C9orf40Q8IXQ3 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.06■□□□□ 0.8
C9orf40Q8IXQ3 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.06■□□□□ 0.8
C9orf40Q8IXQ3 RARRES2P6-201ENST00000567333 442 ntBASIC20.06■□□□□ 0.8
C9orf40Q8IXQ3 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.06■□□□□ 0.8
C9orf40Q8IXQ3 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
C9orf40Q8IXQ3 AC233723.2-201ENST00000623798 2106 ntBASIC20.06■□□□□ 0.8
C9orf40Q8IXQ3 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
C9orf40Q8IXQ3 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
C9orf40Q8IXQ3 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
C9orf40Q8IXQ3 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
C9orf40Q8IXQ3 OR7E47P-201ENST00000546390 1422 ntBASIC20.05■□□□□ 0.8
C9orf40Q8IXQ3 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
C9orf40Q8IXQ3 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
C9orf40Q8IXQ3 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
C9orf40Q8IXQ3 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
C9orf40Q8IXQ3 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
C9orf40Q8IXQ3 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
C9orf40Q8IXQ3 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
C9orf40Q8IXQ3 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
C9orf40Q8IXQ3 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
C9orf40Q8IXQ3 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
C9orf40Q8IXQ3 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.04■□□□□ 0.8
C9orf40Q8IXQ3 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
C9orf40Q8IXQ3 YBX1P1-201ENST00000445822 960 ntBASIC20.04■□□□□ 0.8
C9orf40Q8IXQ3 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.04■□□□□ 0.8
C9orf40Q8IXQ3 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
C9orf40Q8IXQ3 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
C9orf40Q8IXQ3 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
C9orf40Q8IXQ3 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
C9orf40Q8IXQ3 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
C9orf40Q8IXQ3 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 BX005040.4-201ENST00000637145 1518 ntBASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 AC026271.2-201ENST00000428091 497 ntBASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.03■□□□□ 0.8
C9orf40Q8IXQ3 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
C9orf40Q8IXQ3 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
C9orf40Q8IXQ3 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
C9orf40Q8IXQ3 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
C9orf40Q8IXQ3 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
C9orf40Q8IXQ3 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.02■□□□□ 0.8
C9orf40Q8IXQ3 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.02■□□□□ 0.8
C9orf40Q8IXQ3 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
C9orf40Q8IXQ3 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
C9orf40Q8IXQ3 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
C9orf40Q8IXQ3 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
C9orf40Q8IXQ3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
C9orf40Q8IXQ3 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.01■□□□□ 0.79
C9orf40Q8IXQ3 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.01■□□□□ 0.79
C9orf40Q8IXQ3 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
C9orf40Q8IXQ3 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
C9orf40Q8IXQ3 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
C9orf40Q8IXQ3 AC097381.1-201ENST00000429019 1296 ntBASIC20.01■□□□□ 0.79
C9orf40Q8IXQ3 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.01■□□□□ 0.79
C9orf40Q8IXQ3 MIR6821-201ENST00000617625 74 ntBASIC20.01■□□□□ 0.79
C9orf40Q8IXQ3 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
C9orf40Q8IXQ3 AC012676.1-201ENST00000574705 1949 ntBASIC20.01■□□□□ 0.79
C9orf40Q8IXQ3 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
C9orf40Q8IXQ3 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
C9orf40Q8IXQ3 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20■□□□□ 0.79
C9orf40Q8IXQ3 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
C9orf40Q8IXQ3 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
C9orf40Q8IXQ3 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
C9orf40Q8IXQ3 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
C9orf40Q8IXQ3 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
C9orf40Q8IXQ3 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
C9orf40Q8IXQ3 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms