Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD3Q3KNS1 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTCHD3Q3KNS1 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 AC010525.1-201ENST00000585559 441 ntBASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
PTCHD3Q3KNS1 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 BX842568.3-201ENST00000418104 571 ntBASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 AC233992.3-201ENST00000607491 485 ntBASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 AC092053.2-201ENST00000640557 1818 ntBASIC21.18■□□□□ 0.98
PTCHD3Q3KNS1 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTCHD3Q3KNS1 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTCHD3Q3KNS1 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PTCHD3Q3KNS1 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
PTCHD3Q3KNS1 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.16■□□□□ 0.98
PTCHD3Q3KNS1 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
PTCHD3Q3KNS1 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTCHD3Q3KNS1 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTCHD3Q3KNS1 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 AC026271.2-201ENST00000428091 497 ntBASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTCHD3Q3KNS1 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.14■□□□□ 0.98
PTCHD3Q3KNS1 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
PTCHD3Q3KNS1 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
PTCHD3Q3KNS1 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
PTCHD3Q3KNS1 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
PTCHD3Q3KNS1 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD3Q3KNS1 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD3Q3KNS1 SLC47A1P1-202ENST00000449666 945 ntBASIC21.14■□□□□ 0.97
PTCHD3Q3KNS1 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.14■□□□□ 0.97
PTCHD3Q3KNS1 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD3Q3KNS1 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTCHD3Q3KNS1 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 AC126544.1-201ENST00000580842 1059 ntBASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 AC068587.7-201ENST00000641602 218 ntBASIC21.13■□□□□ 0.97
PTCHD3Q3KNS1 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms