Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC23.93■■□□□ 1.42
PEX3P56589 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
PEX3P56589 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
PEX3P56589 AC139530.1-201ENST00000575312 1977 ntBASIC23.92■■□□□ 1.42
PEX3P56589 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
PEX3P56589 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PEX3P56589 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
PEX3P56589 AC233723.2-201ENST00000623798 2106 ntBASIC23.92■■□□□ 1.42
PEX3P56589 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PEX3P56589 MIR935-201ENST00000401179 91 ntBASIC23.92■■□□□ 1.42
PEX3P56589 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC23.92■■□□□ 1.42
PEX3P56589 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.92■■□□□ 1.42
PEX3P56589 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
PEX3P56589 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
PEX3P56589 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
PEX3P56589 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.92■■□□□ 1.42
PEX3P56589 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
PEX3P56589 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PEX3P56589 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PEX3P56589 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
PEX3P56589 AK1-201ENST00000223836 736 ntTSL 3 BASIC23.91■■□□□ 1.42
PEX3P56589 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PEX3P56589 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC23.91■■□□□ 1.42
PEX3P56589 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC23.91■■□□□ 1.42
PEX3P56589 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC23.91■■□□□ 1.42
PEX3P56589 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
PEX3P56589 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
PEX3P56589 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
PEX3P56589 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC23.91■■□□□ 1.42
PEX3P56589 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PEX3P56589 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.9■■□□□ 1.42
PEX3P56589 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PEX3P56589 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PEX3P56589 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
PEX3P56589 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PEX3P56589 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PEX3P56589 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
PEX3P56589 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC23.9■■□□□ 1.42
PEX3P56589 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC23.9■■□□□ 1.42
PEX3P56589 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.9■■□□□ 1.42
PEX3P56589 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.9■■□□□ 1.42
PEX3P56589 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.9■■□□□ 1.42
PEX3P56589 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
PEX3P56589 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
PEX3P56589 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC23.9■■□□□ 1.42
PEX3P56589 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
PEX3P56589 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
PEX3P56589 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
PEX3P56589 MPST-204ENST00000404393 1329 ntTSL 5 BASIC23.89■■□□□ 1.42
PEX3P56589 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
PEX3P56589 MFF-208ENST00000409616 1247 ntTSL 5 BASIC23.89■■□□□ 1.41
PEX3P56589 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC23.89■■□□□ 1.41
PEX3P56589 SP2-202ENST00000613139 908 ntTSL 5 BASIC23.89■■□□□ 1.41
PEX3P56589 OR7E47P-201ENST00000546390 1422 ntBASIC23.89■■□□□ 1.41
PEX3P56589 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.89■■□□□ 1.41
PEX3P56589 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
PEX3P56589 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PEX3P56589 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
PEX3P56589 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
PEX3P56589 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
PEX3P56589 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC23.88■■□□□ 1.41
PEX3P56589 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PEX3P56589 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
PEX3P56589 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.88■■□□□ 1.41
PEX3P56589 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC23.88■■□□□ 1.41
PEX3P56589 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC23.87■■□□□ 1.41
PEX3P56589 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PEX3P56589 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PEX3P56589 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
PEX3P56589 NT5C3AP1-201ENST00000394500 1012 ntBASIC23.87■■□□□ 1.41
PEX3P56589 AC027612.3-201ENST00000413684 1047 ntBASIC23.87■■□□□ 1.41
PEX3P56589 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC23.87■■□□□ 1.41
PEX3P56589 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PEX3P56589 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
PEX3P56589 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
PEX3P56589 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.87■■□□□ 1.41
PEX3P56589 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC23.86■■□□□ 1.41
PEX3P56589 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC23.86■■□□□ 1.41
PEX3P56589 ASL-203ENST00000380839 1765 ntTSL 5 BASIC23.86■■□□□ 1.41
PEX3P56589 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
PEX3P56589 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
PEX3P56589 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
PEX3P56589 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PEX3P56589 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
PEX3P56589 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PEX3P56589 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PEX3P56589 AC012676.1-201ENST00000574705 1949 ntBASIC23.85■■□□□ 1.41
PEX3P56589 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
PEX3P56589 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.85■■□□□ 1.41
PEX3P56589 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
PEX3P56589 RARRES2P6-201ENST00000567333 442 ntBASIC23.85■■□□□ 1.41
PEX3P56589 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
PEX3P56589 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
PEX3P56589 BX005040.4-201ENST00000637145 1518 ntBASIC23.84■■□□□ 1.41
PEX3P56589 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
PEX3P56589 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PEX3P56589 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC23.84■■□□□ 1.41
PEX3P56589 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PEX3P56589 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
PEX3P56589 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms