Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSX1P28360 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSX1P28360 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
MSX1P28360 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MSX1P28360 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.82■□□□□ 0.76
MSX1P28360 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.82■□□□□ 0.76
MSX1P28360 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.82■□□□□ 0.76
MSX1P28360 RARRES2P11-201ENST00000635158 484 ntBASIC19.82■□□□□ 0.76
MSX1P28360 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MSX1P28360 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.82■□□□□ 0.76
MSX1P28360 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.82■□□□□ 0.76
MSX1P28360 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSX1P28360 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSX1P28360 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSX1P28360 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSX1P28360 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
MSX1P28360 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.81■□□□□ 0.76
MSX1P28360 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSX1P28360 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.81■□□□□ 0.76
MSX1P28360 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSX1P28360 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX1P28360 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX1P28360 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
MSX1P28360 TSPY26P-201ENST00000476365 1326 ntBASIC19.8■□□□□ 0.76
MSX1P28360 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX1P28360 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
MSX1P28360 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MSX1P28360 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX1P28360 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX1P28360 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX1P28360 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
MSX1P28360 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX1P28360 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX1P28360 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.8■□□□□ 0.76
MSX1P28360 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX1P28360 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.8■□□□□ 0.76
MSX1P28360 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.8■□□□□ 0.76
MSX1P28360 AC090192.1-201ENST00000517740 490 ntBASIC19.8■□□□□ 0.76
MSX1P28360 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.8■□□□□ 0.76
MSX1P28360 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSX1P28360 AC022517.1-201ENST00000592429 346 ntBASIC19.8■□□□□ 0.76
MSX1P28360 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MSX1P28360 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.8■□□□□ 0.76
MSX1P28360 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
MSX1P28360 AC137767.1-201ENST00000602918 1920 ntBASIC19.8■□□□□ 0.76
MSX1P28360 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19.8■□□□□ 0.76
MSX1P28360 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSX1P28360 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSX1P28360 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.79■□□□□ 0.76
MSX1P28360 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
MSX1P28360 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.79■□□□□ 0.76
MSX1P28360 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSX1P28360 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
MSX1P28360 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
MSX1P28360 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSX1P28360 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.79■□□□□ 0.76
MSX1P28360 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.78■□□□□ 0.76
MSX1P28360 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.78■□□□□ 0.76
MSX1P28360 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSX1P28360 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.78■□□□□ 0.76
MSX1P28360 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.78■□□□□ 0.76
MSX1P28360 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.78■□□□□ 0.76
MSX1P28360 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSX1P28360 KRT18P5-201ENST00000436075 1291 ntBASIC19.78■□□□□ 0.76
MSX1P28360 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
MSX1P28360 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.78■□□□□ 0.76
MSX1P28360 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.78■□□□□ 0.76
MSX1P28360 AL137784.2-201ENST00000607332 1000 ntBASIC19.78■□□□□ 0.76
MSX1P28360 IKBKGP1-201ENST00000612193 1073 ntBASIC19.78■□□□□ 0.76
MSX1P28360 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSX1P28360 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
MSX1P28360 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.77■□□□□ 0.76
MSX1P28360 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSX1P28360 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
MSX1P28360 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MSX1P28360 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSX1P28360 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSX1P28360 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MSX1P28360 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSX1P28360 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.77■□□□□ 0.76
MSX1P28360 MIR572-201ENST00000384983 95 ntBASIC19.77■□□□□ 0.76
MSX1P28360 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.77■□□□□ 0.76
MSX1P28360 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.77■□□□□ 0.76
MSX1P28360 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.77■□□□□ 0.76
MSX1P28360 AC233723.2-201ENST00000623798 2106 ntBASIC19.77■□□□□ 0.76
MSX1P28360 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
MSX1P28360 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
MSX1P28360 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
MSX1P28360 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX1P28360 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
MSX1P28360 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX1P28360 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
MSX1P28360 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSX1P28360 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.76■□□□□ 0.75
MSX1P28360 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX1P28360 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX1P28360 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX1P28360 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX1P28360 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.76■□□□□ 0.75
MSX1P28360 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms