Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL8A1P27658 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL8A1P27658 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL8A1P27658 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL8A1P27658 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL8A1P27658 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19■□□□□ 0.63
COL8A1P27658 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL8A1P27658 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
COL8A1P27658 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL8A1P27658 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
COL8A1P27658 UNC93B4-201ENST00000505679 747 ntBASIC19■□□□□ 0.63
COL8A1P27658 ADM-205ENST00000528544 586 ntTSL 2 BASIC19■□□□□ 0.63
COL8A1P27658 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19■□□□□ 0.63
COL8A1P27658 AC092118.2-201ENST00000613495 667 ntBASIC19■□□□□ 0.63
COL8A1P27658 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
COL8A1P27658 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL8A1P27658 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL8A1P27658 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL8A1P27658 KRT87P-202ENST00000534226 1464 ntBASIC19■□□□□ 0.63
COL8A1P27658 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
COL8A1P27658 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL8A1P27658 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19■□□□□ 0.63
COL8A1P27658 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL8A1P27658 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
COL8A1P27658 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL8A1P27658 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.99■□□□□ 0.63
COL8A1P27658 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.99■□□□□ 0.63
COL8A1P27658 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL8A1P27658 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL8A1P27658 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.99■□□□□ 0.63
COL8A1P27658 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.99■□□□□ 0.63
COL8A1P27658 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.99■□□□□ 0.63
COL8A1P27658 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL8A1P27658 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.99■□□□□ 0.63
COL8A1P27658 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL8A1P27658 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL8A1P27658 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL8A1P27658 AC144652.1-201ENST00000609974 1624 ntBASIC18.99■□□□□ 0.63
COL8A1P27658 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
COL8A1P27658 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC18.98■□□□□ 0.63
COL8A1P27658 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL8A1P27658 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.98■□□□□ 0.63
COL8A1P27658 AP001160.3-201ENST00000601484 763 ntBASIC18.98■□□□□ 0.63
COL8A1P27658 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.98■□□□□ 0.63
COL8A1P27658 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
COL8A1P27658 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.98■□□□□ 0.63
COL8A1P27658 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC18.98■□□□□ 0.63
COL8A1P27658 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
COL8A1P27658 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC18.98■□□□□ 0.63
COL8A1P27658 MKRN4P-201ENST00000444706 1521 ntBASIC18.98■□□□□ 0.63
COL8A1P27658 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
COL8A1P27658 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
COL8A1P27658 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL8A1P27658 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.97■□□□□ 0.63
COL8A1P27658 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL8A1P27658 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
COL8A1P27658 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
COL8A1P27658 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL8A1P27658 AC128676.1-201ENST00000454392 318 ntBASIC18.97■□□□□ 0.63
COL8A1P27658 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL8A1P27658 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.97■□□□□ 0.63
COL8A1P27658 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.97■□□□□ 0.63
COL8A1P27658 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL8A1P27658 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL8A1P27658 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL8A1P27658 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL8A1P27658 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
COL8A1P27658 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.96■□□□□ 0.63
COL8A1P27658 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC18.96■□□□□ 0.63
COL8A1P27658 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL8A1P27658 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL8A1P27658 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL8A1P27658 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL8A1P27658 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.96■□□□□ 0.63
COL8A1P27658 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.96■□□□□ 0.63
COL8A1P27658 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.96■□□□□ 0.63
COL8A1P27658 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.96■□□□□ 0.63
COL8A1P27658 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.96■□□□□ 0.63
COL8A1P27658 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.96■□□□□ 0.63
COL8A1P27658 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
COL8A1P27658 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.96■□□□□ 0.63
COL8A1P27658 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC18.96■□□□□ 0.63
COL8A1P27658 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL8A1P27658 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL8A1P27658 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.95■□□□□ 0.62
COL8A1P27658 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.95■□□□□ 0.62
COL8A1P27658 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL8A1P27658 AC010141.3-201ENST00000456659 717 ntBASIC18.95■□□□□ 0.62
COL8A1P27658 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.95■□□□□ 0.62
COL8A1P27658 AC010331.1-201ENST00000611423 582 ntBASIC18.95■□□□□ 0.62
COL8A1P27658 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
COL8A1P27658 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL8A1P27658 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL8A1P27658 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL8A1P27658 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL8A1P27658 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL8A1P27658 AC004687.1-201ENST00000579003 1625 ntBASIC18.94■□□□□ 0.62
COL8A1P27658 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.94■□□□□ 0.62
COL8A1P27658 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL8A1P27658 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms