Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
MSH3P20585 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH3P20585 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH3P20585 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
MSH3P20585 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH3P20585 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.54■■□□□ 1.04
MSH3P20585 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH3P20585 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.54■■□□□ 1.04
MSH3P20585 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.54■■□□□ 1.04
MSH3P20585 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MSH3P20585 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH3P20585 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
MSH3P20585 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH3P20585 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH3P20585 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH3P20585 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSH3P20585 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH3P20585 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH3P20585 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
MSH3P20585 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH3P20585 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.53■■□□□ 1.04
MSH3P20585 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
MSH3P20585 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.53■■□□□ 1.04
MSH3P20585 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.53■■□□□ 1.04
MSH3P20585 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.53■■□□□ 1.04
MSH3P20585 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
MSH3P20585 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.53■■□□□ 1.04
MSH3P20585 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH3P20585 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
MSH3P20585 LINC00526-201ENST00000581067 1875 ntBASIC21.53■■□□□ 1.04
MSH3P20585 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH3P20585 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
MSH3P20585 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
MSH3P20585 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.52■■□□□ 1.04
MSH3P20585 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH3P20585 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH3P20585 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH3P20585 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH3P20585 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
MSH3P20585 OXCT2P1-201ENST00000447263 1535 ntBASIC21.52■■□□□ 1.04
MSH3P20585 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH3P20585 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH3P20585 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.52■■□□□ 1.04
MSH3P20585 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
MSH3P20585 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH3P20585 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH3P20585 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
MSH3P20585 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
MSH3P20585 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.51■■□□□ 1.03
MSH3P20585 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.51■■□□□ 1.03
MSH3P20585 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.51■■□□□ 1.03
MSH3P20585 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH3P20585 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
MSH3P20585 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
MSH3P20585 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH3P20585 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
MSH3P20585 CLDN5-201ENST00000403084 2357 ntBASIC21.5■■□□□ 1.03
MSH3P20585 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH3P20585 AC079089.2-201ENST00000531211 1277 ntBASIC21.5■■□□□ 1.03
MSH3P20585 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH3P20585 AC127496.7-201ENST00000625110 1798 ntBASIC21.5■■□□□ 1.03
MSH3P20585 EP400NL-214ENST00000641289 2402 ntBASIC21.5■■□□□ 1.03
MSH3P20585 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH3P20585 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.5■■□□□ 1.03
MSH3P20585 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.5■■□□□ 1.03
MSH3P20585 AC019069.1-201ENST00000610008 1333 ntBASIC21.5■■□□□ 1.03
MSH3P20585 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH3P20585 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH3P20585 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH3P20585 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH3P20585 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH3P20585 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
MSH3P20585 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH3P20585 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH3P20585 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.49■■□□□ 1.03
MSH3P20585 AC242852.2-201ENST00000615738 1807 ntBASIC21.49■■□□□ 1.03
MSH3P20585 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH3P20585 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
MSH3P20585 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH3P20585 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH3P20585 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH3P20585 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH3P20585 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH3P20585 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH3P20585 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH3P20585 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH3P20585 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms