Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
LIMS4P0CW20 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS4P0CW20 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS4P0CW20 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.28■□□□□ 0.68
LIMS4P0CW20 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS4P0CW20 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS4P0CW20 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS4P0CW20 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS4P0CW20 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
LIMS4P0CW20 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS4P0CW20 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS4P0CW20 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS4P0CW20 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.27■□□□□ 0.68
LIMS4P0CW20 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS4P0CW20 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS4P0CW20 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS4P0CW20 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS4P0CW20 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS4P0CW20 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS4P0CW20 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMS4P0CW20 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
LIMS4P0CW20 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LIMS4P0CW20 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
LIMS4P0CW20 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMS4P0CW20 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS4P0CW20 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS4P0CW20 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS4P0CW20 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS4P0CW20 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
LIMS4P0CW20 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS4P0CW20 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS4P0CW20 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMS4P0CW20 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMS4P0CW20 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMS4P0CW20 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
LIMS4P0CW20 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMS4P0CW20 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS4P0CW20 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMS4P0CW20 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMS4P0CW20 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS4P0CW20 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS4P0CW20 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS4P0CW20 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS4P0CW20 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS4P0CW20 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMS4P0CW20 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS4P0CW20 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMS4P0CW20 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.25■□□□□ 0.67
LIMS4P0CW20 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
LIMS4P0CW20 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS4P0CW20 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS4P0CW20 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS4P0CW20 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS4P0CW20 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LIMS4P0CW20 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMS4P0CW20 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.24■□□□□ 0.67
LIMS4P0CW20 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMS4P0CW20 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS4P0CW20 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
LIMS4P0CW20 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS4P0CW20 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS4P0CW20 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS4P0CW20 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
LIMS4P0CW20 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS4P0CW20 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS4P0CW20 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS4P0CW20 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS4P0CW20 AC103834.1-201ENST00000520383 144 ntBASIC19.24■□□□□ 0.67
LIMS4P0CW20 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.24■□□□□ 0.67
LIMS4P0CW20 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMS4P0CW20 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMS4P0CW20 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS4P0CW20 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMS4P0CW20 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMS4P0CW20 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS4P0CW20 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMS4P0CW20 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
LIMS4P0CW20 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMS4P0CW20 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LIMS4P0CW20 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.23■□□□□ 0.67
LIMS4P0CW20 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LIMS4P0CW20 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMS4P0CW20 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMS4P0CW20 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMS4P0CW20 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMS4P0CW20 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.23■□□□□ 0.67
LIMS4P0CW20 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LIMS4P0CW20 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMS4P0CW20 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.23■□□□□ 0.67
LIMS4P0CW20 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
LIMS4P0CW20 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMS4P0CW20 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
LIMS4P0CW20 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMS4P0CW20 TSPY13P-201ENST00000338964 914 ntBASIC19.22■□□□□ 0.67
LIMS4P0CW20 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.22■□□□□ 0.67
LIMS4P0CW20 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMS4P0CW20 AC103724.3-201ENST00000564481 992 ntBASIC19.22■□□□□ 0.67
LIMS4P0CW20 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC19.22■□□□□ 0.67
LIMS4P0CW20 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.22■□□□□ 0.67
LIMS4P0CW20 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms